LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr4g0665	ATGGCATATCTGTCTTCGGGAGCTTCTCAAATAATATATGCGAGACAATACAGGCATTCTGGAAGTAATGCAATTGTTGCTAGAACATCTAACATGGAAATGCGGCAACTACGGGACTGTGGCACAAATCATAGAATTTCAAAGCACCAGTTAAACATGTGGGCTATTGCAGGAATTAAGAAGAACAAGTTTGTCAATAAAATTGTCGTAAAGGCTGTAGCAGAAAAGGAAATGTCAAACAATACTCCTCATTCCAAGTATGATGTTTTTGTAAGCTTTAGAGGCGAGGACATCCGCCGAGGCTTTCTCAGCCATTTGGTTGAGATATCTTCTCGAAAGCAAATAAATGTCTTTGTTGACGACAAACTTACGAGGGGAGAGGACATATCAGATTCACTTTTTCAAGCAATTGAAGGGTCATGCATTTCATTGATCATATTCTCAGAAAACTATGCTTCTTCACGTTGGTGTTTAGAAGAGCTTGCCAAAATAATTGAGTGCAAAGAGAAATATGGACAGATTGTAATACCTGTTTTCTATGAAGTAGATCCTTCAAATGTACGATATCAAAAGAAGAGTTATGAAAATGCATTTGCTGAACATGAAAAAAGGTATAAGTCCAAGGTGCAGATATGGAGACGTGCTTTGAATATATCTGCTAATTTGTCAGGAATTACATCATCAAGTCTTCAGAATGATGCTGAGCTACTTGAAGAAATCATCAATGTCGTGGTGAAGACAATGAGTAACCACCCTATTATCACAAAAGGACTTATTGGAATTGGTAAAACAATTGCACGTTTAGAATCATTGTTACGTCAAGAGTCAGAAAAGGTTCGTGTCATTGGAATTTGGGGTATGGGAGGCATTGGCAAAACTACTGTTGCAGAAATGTATTTTAACCAAAATTTCTCTGAATATGACGGTGGTTGTTTTTTGGAAAAGGTAAGTGAAGAACTCGTACGGCATGGAATAACATATTTAAAAGAAAAGCTTTTTTCTACACTATTAGCTGAAGATGTGAAAATCAATTCACCAAATTGGCTGTCGGATTATACTGCGAAAAGGATTGGCCGCATGAAGGTTCTTATTGTTCTTGATGATGTTAAGGAAGAAGACCAACTTGAGAAGTTATTTGGTACTCTTGATTGGTTTCGACCCGATAGTAGAATAATTGTAACAGCTAGAGATAAGCAAGTACTTATTGCTAATAAAGTTGATGATCATGATATATTAGAAGTTCGGGAATTGGAGCCTAGTGAAGCACTTGAGCTTTTCAATTTGAATGCCTTTAAACAACGTCATCTTGAAAGGGATTATTATGATTTATCAGAGAGGGTGGTCAATTATGCTAAAGGAATTCCATTAGTTCTTAAAGTTTTGGGTAATCTGCTTTGTGGAAAAGAAAGGGAAGTATGGGAAAGTCGGCTAGATAAACTTAAGAGAATGCAAAATCCTGAAGTTTATGATGTACTGAGACTCAGTTATGATGATCTTGATCATTTAGAGAAAAAATATTTTTTAGATATTGCTTGTTTCTTCAATGGGTTGAGTTTGAAAGTGGACTACATGCAACTTTTATTGAAAGATTATGAAAGTGACAATTCAGTGGTTGTTGGGTTAGAAAGTTTGAAAGATAAAGCTCTTATAACTATTTCTAAATATAATGTAATATCTATGCATGACATGATACAAGAAATGGGTAGGGAGGTTGTTCGCAAAGAATCCAGTGAAGATCCTAGTAAACGCAGTCGATTATGGGATCCTGAAGAAATTTGTGATGCATTTAAAAATGTTAAGGGTACTGATGCACTGCCAGCTATTAGAAGCATAAGGGCAGACTTGTCAGTAATTAGGAAGCTGAAGTTAAGCTCCCATGTATTTGCCAAGATGACCAATCTGAAATTTTTGGATTTTAATGGTTGGTACGATCAAGAATGTTTTGATCTTCAAGGGCCTCAATCTTTTCCAACTGGTCTAAGATATCTTCATTGGATACATTATCCTCTAAAATCATTCCCAGAGAAGTTTTCTGCAGAGAACCTTGTTATATTGGACTTGTCACGTGGCCTAGTGGAAAAGCTTTGGTCTGGAGTGCAGGAACTAGTTAATCTAAGAGAAGTTCGACTCTCTAATTCAGTATTACTGAAGGAGTTACCAGACTTTTCCAAAGCCACAAGTCTTAATGTATTGCTTATGGAACATTGTACTGGGTTGGAAAGCATCCATCCATCTATTTTCTCTCTTCAAAAGCTTATGCAATTGGACCTAAGTCTTTGCTTTTCCCTTGCAACATTTACAAGCAGTTCCCATTTAAGCTCCCTCCATTATCTCAACCTTGGATTTTGCACAAATCTTAGTAAATTCTCAGTGACTTTGGAGAATATAATAGAATTAGATCTAACTGCCATTCCCATCAATGCACTGCCAGCATCTATTGGATTTCAAAGCAAGCTAGAAACCCTGGTTTTAAAACTCACTGAAATTGAGAGCATACCTTCAAGTATCAAGAATCTTACAAGACTAAGAAAACTAGACATACAACGTTGCAAAAAGCTTCTGGCTCTACCTGAGCTTCCTTCATCACTTGAAACTCTACTTGTTGAATGTATATCATTGAAGACTGTAATGTTCCCTTCAACAGCTGCTGAACAATTCAAGGAAAACAAGAAAAGGGTTGAGTTCTGGAATTGCTTGAATCTGGACAAACGTTCTCTCATAAATATTGGGTTTAATATGCAAATCAATTTGATGAAGTTTGCATATCAACATTTACTGACACTGGAACATGATTCTGTTGAAAGTTATGTTGATTACAAAGACAACTATGCTTCTTATCAAGCAGTGTATGTGTATCCTGGAAGTAGTGTTCCAGAGTGGTTCGAGTACAAGACAACAAAGAATGAGATGATTGTTGATCTCTCTTCTCATCTCTCGCCTTTGTTGGGCTTTGTTTTTTGCTTCATCCTTGTTGAAGACTCCCAACATTGTTACGGAATTGAATTGAAAATCACTACAATTGATGCTGAGGGTGATGGTGAAAAGGATGGTATAATTATCTACATGAATAGGTCATGTTTCTATATTGAATCAGATCATGTGTGCATGATTTACGACCAACAATTTTCTCACTACCTAACCAGCATAGCAAAAAATCAGACAAGGTTTAAAATCAAAGTCACAGCAAGGAGACAAACCAAGACATATAGAGAAATACCAGAGGTGGAGCTAAAAGGGTTTGGCATCAGCCCTGTATACAACTCAACATACCACGATCTTATTCACCAGATGAAGAGGTTGATTTAG	3306	0.3666	MAYLSSGASQIIYARQYRHSGSNAIVARTSNMEMRQLRDCGTNHRISKHQLNMWAIAGIKKNKFVNKIVVKAVAEKEMSNNTPHSKYDVFVSFRGEDIRRGFLSHLVEISSRKQINVFVDDKLTRGEDISDSLFQAIEGSCISLIIFSENYASSRWCLEELAKIIECKEKYGQIVIPVFYEVDPSNVRYQKKSYENAFAEHEKRYKSKVQIWRRALNISANLSGITSSSLQNDAELLEEIINVVVKTMSNHPIITKGLIGIGKTIARLESLLRQESEKVRVIGIWGMGGIGKTTVAEMYFNQNFSEYDGGCFLEKVSEELVRHGITYLKEKLFSTLLAEDVKINSPNWLSDYTAKRIGRMKVLIVLDDVKEEDQLEKLFGTLDWFRPDSRIIVTARDKQVLIANKVDDHDILEVRELEPSEALELFNLNAFKQRHLERDYYDLSERVVNYAKGIPLVLKVLGNLLCGKEREVWESRLDKLKRMQNPEVYDVLRLSYDDLDHLEKKYFLDIACFFNGLSLKVDYMQLLLKDYESDNSVVVGLESLKDKALITISKYNVISMHDMIQEMGREVVRKESSEDPSKRSRLWDPEEICDAFKNVKGTDALPAIRSIRADLSVIRKLKLSSHVFAKMTNLKFLDFNGWYDQECFDLQGPQSFPTGLRYLHWIHYPLKSFPEKFSAENLVILDLSRGLVEKLWSGVQELVNLREVRLSNSVLLKELPDFSKATSLNVLLMEHCTGLESIHPSIFSLQKLMQLDLSLCFSLATFTSSSHLSSLHYLNLGFCTNLSKFSVTLENIIELDLTAIPINALPASIGFQSKLETLVLKLTEIESIPSSIKNLTRLRKLDIQRCKKLLALPELPSSLETLLVECISLKTVMFPSTAAEQFKENKKRVEFWNCLNLDKRSLINIGFNMQINLMKFAYQHLLTLEHDSVESYVDYKDNYASYQAVYVYPGSSVPEWFEYKTTKNEMIVDLSSHLSPLLGFVFCFILVEDSQHCYGIELKITTIDAEGDGEKDGIIIYMNRSCFYIESDHVCMIYDQQFSHYLTSIAKNQTRFKIKVTARRQTKTYREIPEVELKGFGISPVYNSTYHDLIHQMKRLI*	1102

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr4g0665	1101	PRINTS	Disease resistance protein signature	281	296	-	-
	Tpr4g0665	1101	PRINTS	Disease resistance protein signature	356	370	-	-
	Tpr4g0665	1101	PRINTS	Disease resistance protein signature	451	465	-	-
	Tpr4g0665	1101	PRINTS	Disease resistance protein signature	837	853	-	-
	Tpr4g0665	1101	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	249	510	IPR027417	-
	Tpr4g0665	1101	ProSiteProfiles	TIR domain profile.	85	248	IPR000157	GO:0007165
	Tpr4g0665	1101	Gene3D	-	416	500	IPR042197	-
	Tpr4g0665	1101	SUPERFAMILY	L domain-like	613	916	-	-
	Tpr4g0665	1101	SUPERFAMILY	Toll/Interleukin receptor TIR domain	83	224	IPR035897	-
	Tpr4g0665	1101	Gene3D	Ribonuclease Inhibitor	522	948	IPR032675	-
	Tpr4g0665	1101	Gene3D	-	248	409	IPR027417	-
	Tpr4g0665	1101	Pfam	TIR domain	86	247	IPR000157	GO:0007165
	Tpr4g0665	1101	Pfam	NB-ARC domain	269	485	IPR002182	GO:0043531
	Tpr4g0665	1101	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	82	1098	-	-
	Tpr4g0665	1101	Pfam	C-JID domain	952	1086	IPR045344	-
	Tpr4g0665	1101	SMART	till_3	86	222	IPR000157	GO:0007165
	Tpr4g0665	1101	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	82	1098	IPR044974	GO:0006952
	Tpr4g0665	1101	Gene3D	-	84	247	IPR035897	-
	Tpr4g0665	1101	SUPERFAMILY	"Winged helix" DNA-binding domain	487	596	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr4g0665	Tpr-Chr4	6123609	6130664	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr4g0665	87	903	WRKY Transcription Factor Family	AT4G12020	31.535	6.62e-91	319

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr4g0665	-		-	aprc:113850949	1269.99