Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0645 ATGTCTTATAGTTTCAACAACAACCTTTTCAACACCAATGATAACATTACCACTACCACCTTGGATGTTGCTAAATTTGTTGGATTTGATGATGAAGTAAATTACCCTTCTTATTCTGATTTTCCACCTGGTTTCATCCCTGAGGACTTATTCAATTCACCTTCCTTTCTTTCTTCTCCTAAGATTCCTTCATCTTATACAACCGAGCCTTCTTCTGACCAAAGCATGAACCAACAACACAACAAGGAATTAGAAGAGATAAACATCTCTGAGCTCTCTTTCCAATCACAAAAACAGAACATACATGATCTCTTTCAATCTTCCACAAATATGTTTCAAGTGGAGGAGCAACTAAAGAAAGAGGACACATTGATATTCAATGAAACTACAAAGCATAACAATTTTTCATTTGAGAGAACAACAAAACATGAAACACAAACAAATTCTTCAGCTCCTAGTTCTACTTTTTTCAACAACAATAATGCTTCTATGTCTATTAAAGAACAAAAAAAATCAGAAGAAGATGGATACAAGTGGAGAAAATATGGAGAAAAACAAGTGAAAGGAAGTGAAAATCCAAGAAGTTATTATAAGTGCACTAATCCTATTTGCTTGATGAAGAAGAAAGTTGAAAGGTCTTTGGATGGATATATTACTGAAATTGTTTATAAGGGAAATCATAACCATCCTAAGCCTAATTTGTCTACAAAAAGAAGAACAAGTTCTCAATCAATGATTTCTGATTTTTCTTTGGGAGAGGATGAGTTTGAGCAAACATCACAAACTAGTTTTTCTGGAGGAGATTATGATGAGTTTGGACCTGAGGCCAAAAGATGGAAGGGAGATAATGAAAATGAATCTTATTCCATAGATGGGTGTAGAACTGTGAAGGAACCTAGAGTTGTGGTTCAAACTACAAGTGAAATTGATATACTTGATGATGGATATAGGTGGAGGAAATATGGACAAAAAGTAGTCAAAGGAAATCCAAATCCAAGGAGCTACTACAAATGTGTAATCCAAGGTTGTCCTGTGAGAAAACATGTTGAGAGAGCAGCACATGATATGAAAGCAGTAATAACAACATATGAAGGCAAACATAACCATGATGTACCTTTAGGTAGAGGAAATTCAAGCTATAACATCAACAAAACTTCTCTTAATGTAACACCTATTAGGCCTTCAACAGTTACTAATTATTCTAGCTTATCAAATTTCACAAATTCACTTCATGATGAATCAAAGCTACCAAATTATGGAACTCAAGAAGAAAATTTTCAGCTAGACATGATGATGATGAATTCTAAAAGCTTTTTCGACAAATCAATCGGTTCAAATACCAATTATGAACAATACTCGGCTAAGGATAACTCCTTCCTTCAGTCTTTTATGTCGAAGAACTTTTAA 1407 0.3397 MSYSFNNNLFNTNDNITTTTLDVAKFVGFDDEVNYPSYSDFPPGFIPEDLFNSPSFLSSPKIPSSYTTEPSSDQSMNQQHNKELEEINISELSFQSQKQNIHDLFQSSTNMFQVEEQLKKEDTLIFNETTKHNNFSFERTTKHETQTNSSAPSSTFFNNNNASMSIKEQKKSEEDGYKWRKYGEKQVKGSENPRSYYKCTNPICLMKKKVERSLDGYITEIVYKGNHNHPKPNLSTKRRTSSQSMISDFSLGEDEFEQTSQTSFSGGDYDEFGPEAKRWKGDNENESYSIDGCRTVKEPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCVIQGCPVRKHVERAAHDMKAVITTYEGKHNHDVPLGRGNSSYNINKTSLNVTPIRPSTVTNYSSLSNFTNSLHDESKLPNYGTQEENFQLDMMMMNSKSFFDKSIGSNTNYEQYSAKDNSFLQSFMSKNF* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0645 468 Pfam WRKY DNA -binding domain 174 230 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr4g0645 468 Pfam WRKY DNA -binding domain 313 369 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr4g0645 468 ProSiteProfiles WRKY domain profile. 168 232 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr4g0645 468 SUPERFAMILY WRKY DNA-binding domain 172 232 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tpr4g0645 468 MobiDBLite consensus disorder prediction 61 81 - -
Tpr4g0645 468 Gene3D WRKY domain 297 373 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tpr4g0645 468 Gene3D WRKY domain 158 233 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tpr4g0645 468 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 30 465 IPR044810 GO:0003700
Tpr4g0645 468 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 30 465 - -
Tpr4g0645 468 SMART WRKY_cls 173 231 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr4g0645 468 SMART WRKY_cls 312 371 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr4g0645 468 SUPERFAMILY WRKY DNA-binding domain 304 372 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tpr4g0645 468 ProSiteProfiles WRKY domain profile. 307 372 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0645 Tpr-Chr4 5995056 5998767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0645 158 409 WRKY Transcription Factor Family AT2G38470 56.757 2.44e-100 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tpr4g0645 WRKY 1.8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0645 K13424 - gmx:100127367 512.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g0645 4 5995056 5998767 Tpr4g0645 4 5995056 5998767 ECH
Tpr6g2188 6 23812918 23816471 Tpr4g0645 4 5995056 5998767 PCT