Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0621 ATGGATTTCTGGCCAGAGTTTCTTGCAAGTAGTTCAGGTAGAGAATTTGTTGCAGGTGGATTTGGAGGAACTGCTGGTGTAATTTCTGGTTACCCTTTGGATACCCTTAGAATCAGACAACAGAGTGGTCACAATGGTTCTGCTTTTAGCATCCTTAGAAATATGGTTTCTAAAGGAGGATTTGCTTCTTTGTACCGTGGAATGGGTGCACCATTGGCATCAGTTACTTTTCAGAATGCTGTGGTTTTTCAAACATATGCAGTTCTTTCAAGGGCATGTGACTCATCAGATTCTGCTAAAGACCCTCCATCCTACAAGAGTGTTGCATTAGGTGGAATGGGCACAGGGGGTCTTCAAAGTTTATTGCTTTCCCCTGTGGAGCTGATTAAAATTCGACTTCAACTGCAAAACACAAACCAGTCAAAAGAATCAGGAATAAGTCCTTCAAAAGTAGTTAAAAATATATGGAGAAAAGAGGGTTTGCGCGGCATATATCGAGGACTTGGTATCACTGTAATGAGGGATGTACCTTCTCATGGAGTTTACTTCTGGACATATGAATACATGAGGGAACAATTGCATCCAGGTTGCAGAAAAGATGGTCAAGAAAGTTTGAATACTATGTTGGTGTCTGGAGGATTAGCAGGGGTAGCGAGTTGGGTTTGTTGCTACCCTATTGATGTTGTAAAGACAAGGCTACAAGCTCAAACACCGTCTTCGTTAAAATACAACGGTGTTTTTGACTGTATCGTAAAAAGCGTCAAAGAAGAAGGATACCTTGTGTTGTGGCGTGGTTTAGGAACTGCAGTCTCCAGAGCATTTGTTGTGAATGGTGCTGTATTTGCTGCTTATGAATTTACACTGAGGTTTCTGTTTAACAATGAAAACGTTCAAATTCAGGAAACAATTTAG 912 0.409 MDFWPEFLASSSGREFVAGGFGGTAGVISGYPLDTLRIRQQSGHNGSAFSILRNMVSKGGFASLYRGMGAPLASVTFQNAVVFQTYAVLSRACDSSDSAKDPPSYKSVALGGMGTGGLQSLLLSPVELIKIRLQLQNTNQSKESGISPSKVVKNIWRKEGLRGIYRGLGITVMRDVPSHGVYFWTYEYMREQLHPGCRKDGQESLNTMLVSGGLAGVASWVCCYPIDVVKTRLQAQTPSSLKYNGVFDCIVKSVKEEGYLVLWRGLGTAVSRAFVVNGAVFAAYEFTLRFLFNNENVQIQETI* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0621 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 203 290 IPR018108 -
Tpr4g0621 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 192 IPR018108 -
Tpr4g0621 303 SUPERFAMILY Mitochondrial carrier 14 286 IPR023395 -
Tpr4g0621 303 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Tpr4g0621 303 PRINTS Mitochondrial carrier protein signature 118 136 IPR002067 GO:0055085
Tpr4g0621 303 PRINTS Mitochondrial carrier protein signature 165 183 IPR002067 GO:0055085
Tpr4g0621 303 PRINTS Mitochondrial carrier protein signature 212 234 IPR002067 GO:0055085
Tpr4g0621 303 Pfam Mitochondrial carrier protein 207 294 IPR018108 -
Tpr4g0621 303 Pfam Mitochondrial carrier protein 109 193 IPR018108 -
Tpr4g0621 303 Pfam Mitochondrial carrier protein 12 91 IPR018108 -
Tpr4g0621 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 92 IPR018108 -
Tpr4g0621 303 Gene3D Mitochondrial carrier domain 10 302 IPR023395 -
Tpr4g0621 303 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 1 293 - -
Tpr4g0621 303 PANTHER CARNITINE/ACYLCARNITINE CARRIER-LIKE PROTEIN 1 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0621 Tpr-Chr4 5817388 5820361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0621 1 294 Antiporters AT1G79900 70.508 6.12e-138 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0621 K15109 - gmx:100812056 484.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g0621 4 5817388 5820361 Tpr4g0621 4 5817388 5820361 ECH