Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0604 ATGGGTGTGAATTCCAATAGAGTTGATAACTTTGAAACCATTAAAATTCAATCAGAGATACCAATGTTTCAATCACCATTGGAAATTCACAAGGTTAGGTTGCCACCACAAAGAACCACTCTTCAAAAACTTAGACATAGACTCTCTGAAATCTTTTTTCCGGATGATCCTTTTCATGGATTTAAAAACCAAACTTGGGTTATGAAGTTACTTCTTGCTCTTCAATACTTGTTTCCCATTTTTCAATGGGGTCCCGAGTATAGTTTTCGTCTTTTTCGCTCCGATATTGTCTCTGGTCTCACCATTGCTAGCCTCGCCATTCCTCAGGGAATAAGTTATGCCAAGCTTGCAAACTTGCCACCTATTATTGGATTATATTCAAGTTTTGTGCCTGCTTTGATATATTCAGTACTTGGAAGTTCTAGACATCTTGGTGTTGGTCCTGTTTCAATTGCATCATTAGTTATGGGATCAATGTTAAGTGAAAGTGTTTCTTATAATCAAGATCCAATTCTATATCTTAAATTGGCTTTCACTGCCACTTTTTTTGCTGGATTGTTCCAATCCTCTCTTGGTGTATTAAGGTTAGGCTTTGTGATTGATTTTCTATCAAAGGCAACATTGGTAGGTTTCATGGCTGGTGCAGCAATAATTGTGTCACTACAACAACTCAAAGGGTTACTAGGAATAATTCATTTCACCAACAAGATGCAAATTCTACCTGTTTTGGTCTCTGTTTTCAAGCAAAGAGACGAGTGGTCATGGCAAACTATTTTACTAGGATTCAGTTTCCTAGTCTTTCTGCTGATAACAAGACACATTAGCTTGAAGAGGCCAAAATTATTCTGGATTTCAGCAGCTGCTCCATTGACTTCAGTTATTCTATCAACCATTTTAGTCTTTTCTATGAGAAATAAGATTCATAAAATAGCAATTATTGGTGAATTGCCAAAAGGACTTAATCCACCATCATCAAACATGTTATACTTCAATGGTCCTTATTTGGCTCTTGCTATCAAAACTGGACTTGTCACTGGCATCTTGTCTCTCACTGAAGGAATTGCAGTTGGAAGAACATTTGCTTCACTTAGGAACTACCAAGTAGATGGAAACAAAGAAATGATGGCTATTGGTCTTATGAACATAGCTGGTTCTTGTTCTTCATGTTATGTCACAACAGGATCCTTTTCTCGATCGGCTGTTAACTACAATGCCGGAGCACAGACAGCAGTCTCAAATATAATCATGGCTTCGGCAGTTCTTGTGACTCTTCTGTTTCTCATGCCGCTGTTCTATTACACACCAAATGTTGTCTTAGCTGCCATTATCATCACTGCTGTTATTGGTCTAATTGATTACCGAGCCGCGTACAAGTTGTGGAAGGTTGACAAGCTTGATTTCACAGCGTGTCTGTGCTCCTTTTTTGGTGTTCTCTTCATTTCAGTTCCATTAGGCCTTGCAATCGCGGTGGCAATATCAGTCTTCAAAATCCTGTTGCATGTCTCTAGGCCAAACACAATGGTTTTGGGAAACATTCCAGGGACACCAATTTTCCATAACCTAAATCAATATAAAGAAGCTTTAAGGATTCCTTCATTTATCATTTTGGCTGTTGAGTCTCCCATCTACTTTGCCAATGCAACTTACCTGCAAGAAAGGATACTGAGATGGGTTCGAGAAGAGGAAGAGTGTGTAATAGCAAACAATGGAAGTTCATTGAAATGCATGATTTTAGACATGACAGCCGTGACAGGCATAGACACAAGTGGAATCGACACATTATGTGAACTTAGTAGGAGATTAGAACAAAAATCACTTCAGCTTGTATTGGCAAATCCTATTGGAAATGTGATGGAAAAGTTGCATGAATCAAATATTTTGGAGTCATTTGGAATGAAAGGAGTGTATCTCTCAGTAGGAGAAGCAGTGGCTGACATTTCATCATCGTGGAAAGCTCAGCCATGA 1965 0.3863 MGVNSNRVDNFETIKIQSEIPMFQSPLEIHKVRLPPQRTTLQKLRHRLSEIFFPDDPFHGFKNQTWVMKLLLALQYLFPIFQWGPEYSFRLFRSDIVSGLTIASLAIPQGISYAKLANLPPIIGLYSSFVPALIYSVLGSSRHLGVGPVSIASLVMGSMLSESVSYNQDPILYLKLAFTATFFAGLFQSSLGVLRLGFVIDFLSKATLVGFMAGAAIIVSLQQLKGLLGIIHFTNKMQILPVLVSVFKQRDEWSWQTILLGFSFLVFLLITRHISLKRPKLFWISAAAPLTSVILSTILVFSMRNKIHKIAIIGELPKGLNPPSSNMLYFNGPYLALAIKTGLVTGILSLTEGIAVGRTFASLRNYQVDGNKEMMAIGLMNIAGSCSSCYVTTGSFSRSAVNYNAGAQTAVSNIIMASAVLVTLLFLMPLFYYTPNVVLAAIIITAVIGLIDYRAAYKLWKVDKLDFTACLCSFFGVLFISVPLGLAIAVAISVFKILLHVSRPNTMVLGNIPGTPIFHNLNQYKEALRIPSFIILAVESPIYFANATYLQERILRWVREEEECVIANNGSSLKCMILDMTAVTGIDTSGIDTLCELSRRLEQKSLQLVLANPIGNVMEKLHESNILESFGMKGVYLSVGEAVADISSSWKAQP* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0604 654 PANTHER SLC26A/SULP TRANSPORTER-RELATED 18 654 - -
Tpr4g0604 654 Pfam Sulfate permease family 92 471 IPR011547 GO:0016021
Tpr4g0604 654 ProSiteProfiles STAS domain profile. 523 646 IPR002645 -
Tpr4g0604 654 Pfam STAS domain 524 642 IPR002645 -
Tpr4g0604 654 SUPERFAMILY SpoIIaa-like 529 645 IPR036513 -
Tpr4g0604 654 CDD STAS_SulP_like_sulfate_transporter 524 639 - -
Tpr4g0604 654 ProSitePatterns SLC26A transporters signature. 121 142 IPR018045 GO:0008271|GO:0008272
Tpr4g0604 654 TIGRFAM sulP: sulfate permease 79 642 IPR001902 GO:0015301|GO:0016020|GO:0055085
Tpr4g0604 654 Gene3D STAS domain 503 648 IPR036513 -
Tpr4g0604 654 PANTHER SULFATE TRANSPORTER 18 654 IPR001902 GO:0015301|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0604 Tpr-Chr4 5677266 5683760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0604 1 654 Inorganic Solute Cotransporters AT3G15990 73.323 0.0 1009
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0604 K17471 - gmx:100780331 1114.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g0604 4 5677266 5683760 Tpr4g0604 4 5677266 5683760 ECH
Tpr7g4944 7 57200206 57205727 Tpr4g0604 4 5677266 5683760 PCT