Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0588 ATGGCAAGAGAAGGTCTTGGACTTGAAATAACTGAGCTAAGGTTGGGTTTGCCATGTGGTGAACCACAAAAGAATGAGAAGAAGAGGATGTTTTCCGAGATTGACGGTGGTGTCGGGGAGGAAAATGGAGGTTCGGGTGATCGGAAAATTATAGAGAAGAAGAATCAAGTTGTTGGGTGGCCTCCGGTGTGTTCGTACCGAAAGAAGAACATGAATGAAGGTTCAAAAATGTATATGAAGGTTAGCATGGATGGAGCTCCTTACTTGCGTAAGATTGATCTTGGTTTGCATAAGGGATACTTGGAATTGGCTTTGGCTTTGGAGAAGCTCTTTGGTTGTTGTGGAATTGAAGCATTGAAGGATGCAGAGAATTGTGAACACGTTCCCATTTATGAGGACAAAGATGGTGACTGGATGCTGGTTGGAGATGTCCCTTGGGAAATGTTTATTGAATCATGCAAGAGGTTGAGGATTATGAAGAGGTCAGATGCAAAGGGTTTTGGTCTACAACCAAAAGGATCTTTAAAGAGATTCATATAG 540 0.4241 MAREGLGLEITELRLGLPCGEPQKNEKKRMFSEIDGGVGEENGGSGDRKIIEKKNQVVGWPPVCSYRKKNMNEGSKMYMKVSMDGAPYLRKIDLGLHKGYLELALALEKLFGCCGIEALKDAENCEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKGFGLQPKGSLKRFI* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0588 179 Pfam AUX/IAA family 52 167 IPR033389 -
Tpr4g0588 179 Gene3D - 70 172 - -
Tpr4g0588 179 SUPERFAMILY CAD & PB1 domains 69 160 - -
Tpr4g0588 179 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 167 IPR003311 GO:0005634|GO:0006355
Tpr4g0588 179 PANTHER AUXIN-RESPONSIVE PROTEIN IAA6 4 167 - -
Tpr4g0588 179 ProSiteProfiles PB1 domain profile. 76 163 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0588 Tpr-Chr4 5486504 5491066 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0588 52 165 B3 DNA Binding Superfamily AT4G23980 36.842 1.22e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Tpr4g0588 AUX_IAA 1.1e-42 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0588 K14484 - gmx:547784 290.812