Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0583 ATGAGTTGCTCATTTAAGACTTTCAACAAACAGTTCCCTCTTTTTACCTTTCATCATCATCATAAACTCCCTCACCACTACTCTTCTCCTTTCACAATTAATTGCTCCATCACCCCTAAAATCTCTTCCTCTCAATTTCATTCATCATCATCATCATCACACTCATCATCTCAACCTGCTACATTTATGGAGGTCTTCAAAGCAGTTGCTAAGCAAGAACTTGCAGCTCATGGCAGTGTTGCTATCAGAGCTGATCAGAAGAGTTATAGTTACAAGCAGCTTATCTCGTCGGTGCATCAGATATCTAATCTCTTGTGTGGAAATGATGTGAAGGGAAATCTTGGCGGAGCTCGAATAGGGATTGTTGCCAAACCGTCTGCTGAATTTGTTGCTGGAGTACTTGCGACTTGGTTTAGTGGAGGTGTTGCTGTTCCACTTGCACTCAGCTATCCAGAAGTAGAGCTCCTCTATGTGATGAATAATTCGGATGTGTCTGCCATACTGAGCACTGAAGATCATAGTGAATTAATGCAAAGCATTGCCAGTAAAACCTCTTCTCAGTTTTTTCATATTCCACCTGTTCCTTACAAGTCCTTAGAGAAGAGCAAAGATTCACAAAATGGTGAAAGTGATGCAGACAGAATTTTCCTTGATAATACTTTAAGATCGAGTGAAGATCCGGCACTGATTTTGTATACTAGCGGGACAACGGGTAAACCTAAGGGAGTTGTTCATACACACAGAAGCATCATTGCTCAGGTCCAAACCTTGACGAAAGCATGGGGATACACATCTGCGGATCAGTTTTTGCATTGTCTACCACTACATCATGTCCATGGGCTTTTCAATGGTTTACTGGCCCCTCTCTACGCAGGTTCCACGGTTGAGTTTTTGCCTAAATTTAGTGTCAGTGGAATTTGGAAGAGATGGCGCGAGTCATATCCTACCGAAGGATCTAAGTCTGATGATGCTATAACCGTATTCACCGGAGTTCCAACTATGTACACCCGATTAATACAAGGTTATCATGCCATGGATTCTGAGCTGCAAGCCTCATCAGCATCTGGTGCAAGGAACTTGCGTCTAATGATGAGTGGATCCTCTGCACTTCCCCAACCTGTTATGCAAGAATGGGAATCCATCACTGGACATCGCTTATTGGAGCGATATGGCATGACTGAATTTGTCATGGCAATATCAAATCCATTGAAAGGTGAACGTAAAGCAGGCACTGTTGGCAAACCATTTCCTGGTGTTCAGGTCAAGATTCTTGCAGATGAGGAGCATGAGAGTGAAGGATCTGGAACTGGTGAGCTTTGCGTTAAAAGCCCTTCACTGTTTAAACAATACTGGAAACTTCCTGAGGTAACGAAGGAATCATTTACAGATGATGGATACTTTAAGACCGGAGATGCAGTCACTACAGATAAAGATGGATATTTCATCATTCTAGGACGTAATAACGCGGATATAATCAAGAACGGTGGCTATAAGCTGTCTGCATTAGAAATTGAATCAGTAATAGTAGAGCATCCAACTGTCTCAGAATGTTGTGTTTTGGGTATACCGGATAAAGACTACGGAGAAATTGTTTGTGCAATTGTCGTGCCAGCGACAAAGCAGAATGAAGATTCAAAGTCTGCTCTAAGCCTTGAAGAAGTATCCACTTGGGCAAAAAATAAACTTGCGCCATACAAGATACCATCTCGACTAATCGTGTGGGAGACACTCCCCCGCAATGCAATGGGAAAGGTAAATAAAAAAGAGCTTAAGAAGCTGGTGGTTCCAGAACAGTAA 1797 0.424 MSCSFKTFNKQFPLFTFHHHHKLPHHYSSPFTINCSITPKISSSQFHSSSSSSHSSSQPATFMEVFKAVAKQELAAHGSVAIRADQKSYSYKQLISSVHQISNLLCGNDVKGNLGGARIGIVAKPSAEFVAGVLATWFSGGVAVPLALSYPEVELLYVMNNSDVSAILSTEDHSELMQSIASKTSSQFFHIPPVPYKSLEKSKDSQNGESDADRIFLDNTLRSSEDPALILYTSGTTGKPKGVVHTHRSIIAQVQTLTKAWGYTSADQFLHCLPLHHVHGLFNGLLAPLYAGSTVEFLPKFSVSGIWKRWRESYPTEGSKSDDAITVFTGVPTMYTRLIQGYHAMDSELQASSASGARNLRLMMSGSSALPQPVMQEWESITGHRLLERYGMTEFVMAISNPLKGERKAGTVGKPFPGVQVKILADEEHESEGSGTGELCVKSPSLFKQYWKLPEVTKESFTDDGYFKTGDAVTTDKDGYFIILGRNNADIIKNGGYKLSALEIESVIVEHPTVSECCVLGIPDKDYGEIVCAIVVPATKQNEDSKSALSLEEVSTWAKNKLAPYKIPSRLIVWETLPRNAMGKVNKKELKKLVVPEQ* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0583 598 CDD MCS 79 592 - -
Tpr4g0583 598 ProSitePatterns Putative AMP-binding domain signature. 230 241 IPR020845 -
Tpr4g0583 598 Pfam AMP-binding enzyme C-terminal domain 503 584 IPR025110 -
Tpr4g0583 598 PANTHER MALONATE--COA LIGASE-LIKE 27 593 - -
Tpr4g0583 598 Gene3D - 489 596 IPR045851 -
Tpr4g0583 598 PANTHER ACYL-COA SYNTHETASE 27 593 - -
Tpr4g0583 598 SUPERFAMILY Acetyl-CoA synthetase-like 58 595 - -
Tpr4g0583 598 Gene3D - 66 486 IPR042099 -
Tpr4g0583 598 Pfam AMP-binding enzyme 78 488 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0583 Tpr-Chr4 5452349 5459405 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0583 216 594 Monolignol Biosynthesis Gene Families AT4G19010 28.861 1.07e-43 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0583 K18660 - gmx:100810130 868.226