Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0547 ATGGTGAAATCTAAGAAATTCAGAGGTGTTAGGCAACGCCATTGGGGCTCTTGGGTCTCCGAGATTCGTCATCCTTTATTGAAAAGGAGGGTGTGGCTAGGAACATTTGAGACAGCTGAAGAGGCAGCAAGAGCATATGATGAAGCAGCAATTTTAATGAGTGGAAGAAATGCAAAAACAAATTTTCCTATTTCTGATAACAAGCCAATAACAAATAACAACAATAATAACCAAAAATCATTGGCAACTTCCTCTTCAAATTCCACTACTACTACTACTACTACTACTAATACATCATTATCTGCAATTCTAAGTGCAAAGCTTAGGAAATGTTGCAAATCACCTTCACCTTCACTTACTTGTCTAAGGCTTGACACTGAGAATTCTCACTTTGGAGTGTGGCAAAAAAGAGCGGGCCCTCGTTCGGACTCAAATTGGATCATGATGGTTGAATTGGAAAGGAAGAAGAAAGAAGAAGATGGAGAAATTGTGCCTATTATGGATTCGGAAATATTACCTCCCATTGTTGTTGATGACGATGATTCAGAGAAGGTCGTAAAACCGGAAAATGAAGATGAACAAGAAGATGTAGGAAATGATAATAACAATGGATTGGATGAAGAACAAAGAATTGCACTTCAAATGATAGAAGAACTTCTTAATCATTAA 669 0.3752 MVKSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDEAAILMSGRNAKTNFPISDNKPITNNNNNNQKSLATSSSNSTTTTTTTTNTSLSAILSAKLRKCCKSPSPSLTCLRLDTENSHFGVWQKRAGPRSDSNWIMMVELERKKKEEDGEIVPIMDSEILPPIVVDDDDSEKVVKPENEDEQEDVGNDNNNGLDEEQRIALQMIEELLNH* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0547 222 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Tpr4g0547 222 MobiDBLite consensus disorder prediction 63 97 - -
Tpr4g0547 222 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Tpr4g0547 222 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Tpr4g0547 222 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Tpr4g0547 222 PANTHER ETHYLENE RESPONSE FACTOR 1 222 - -
Tpr4g0547 222 MobiDBLite consensus disorder prediction 175 208 - -
Tpr4g0547 222 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Tpr4g0547 222 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Tpr4g0547 222 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Tpr4g0547 222 MobiDBLite consensus disorder prediction 177 192 - -
Tpr4g0547 222 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 222 - -
Tpr4g0547 222 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0547 Tpr-Chr4 5176430 5178167 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0547 1 221 AP2-EREBP Transcription Factor Family AT1G15360 59.009 8.42e-79 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr4g0547 AP2 1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0547 - - gmx:100785898 266.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g0547 4 5176430 5178167 Tpr4g0547 4 5176430 5178167 ECH