Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0546 ATGGCACAAATTCATCTTCATGGTACTCTTCATGCTACCATCTATGAGGTTGATAAGCTTAACGCTGGTGGTGGTGGAAATATTTTCAGCATGATCAGGCAAAACATTGAGGAGACTGTTGGTATTGGAAAGGGAGTTACTCAACTCTATGCTACCATTGATTTGGAGAAAGCAAGAGTCGGAAGGACAAGGATTATTGAAAAGGAACACACTAATCCAAAATGGTATGAGTCATTTCACATTTACTGCGCTCATTTGGCTTCAAATATCATATTCACTGTGAAAGATGATAATCCTATTGGAGCGACTTTAATTGGAAGAGCTTATGTGCCTGTCGAGGAGGTCTTGGGTGGTGAGGAAATAGATAGATGGGTGGAAATTTTGGATACGGAAAGAAATCCGATAGAATCGGGTTCAAAGATCCATGTGAAACTGCAATATTTTGATGTTACAAAAGACCGAAGCTGGGCTCGAGGTATTCAAAGTGCTAAATTTCCTGGAGTTCCGTATACTTTCTTCTCGCAGAGGCAAGGATGTAAGGTATCTCTTTACCAAGATGCTCATGTGCCGGATAACTTTGTCCCTAAAATATCACTCTCTGGTGGCAAGACTTATCAGCCTCATAGGTGTTGGGAAGATATTTTCGATGCAATCACTAATGCAAAGCATTTGATATACATTACTGGTTGGTCTGTTTATACCGAAATTTCGTTGGTGAGGGATTCTAGGAGGCCAAAGGCCGGGGGAGACGCAACACTTGGTGAGCTTCTCAAGAAAAAGGCTAGTGAAGGTGTTAGGGTTTTGATGCTGGTTTGGGATGATAGAACATCGGTCGGTTTGTTGAAAAAGGACGGATTGATGGCTACTCATGACGAAGAAACCGCACAGTTCTTTGATGGCACTGATGTCCATTGTGTTTTATGCCCCCGCAATCCTGATGATGGTGGTAGTGTCATTCAAGATTTACAGATTTCCACCATGTTTACTCATCACCAGAAGATTGTGGTGGTTGACAGTGAGTTACCTGGTGGAGGGTCAGATAAGCGAAGAATTATGAGTTTTGTTGGGGGTCTTGACCTTTGTGATGGAAGATACGATACTGCGTTCCATTCACTTTTCAGAACCCTTGACACGGCACACCATGATGATTTTCATCAACCCAACTTTCCTGGTGCTGCAATCACAAAAGGTGGTCCAAGGGAACCTTGGCATGACATTCACTCCCGGCTTGAAGGACCTATCGCTTGGGATGTTTTGTTTAACTTTGAGCAGCGATGGAGGAAACAAGGTGGGAAGGATATACTTCTCAATCTGAGAGAGCTTGAAGATTCTATTATTCCCCCATCCCCGGTAATGTTTCCTGATGATCAGGAGACATGGAATGTTCAGTTGTTTAGATCTATTGACGGCGGAGCTGCTTTCGGGTTCCCAGAAACTCCCGAAGATGCTGCGAGAGCTGGTCTTGTTAGTGGAAAGGACAATATCATCGATCGTAGCATTCAAGATGCTTATATTAATGCTATTCGACGCGCAAAGAACTTTATCTATATTGAAAATCAGTATTTCCTTGGAAGCTCTTTTGCTTGGAGTGGTGATGATATTAAGCCTGAAGAAATTGGTGCTTTGCATGTAATCCCAAAGGAACTTTCACTTAAGATTGTTAGTAAGATTGAAGCTGAGGAAAAGTTCACCGTGTACGTTGTGGTCCCAATGTGGCCAGAAGGTGTTCCAGAAAGTGCGTCAGTTCAAGCAATATTGGACTGGCAGAGGAGAACAATGGAGATGATGTACAAGGATATCGTTCAGGCACTCAGGGTCAAGGGAATTGAGGAAGATCCACGGAAATATTTGACGTTCTTCTGTCTTGCTAATCGGGAGGTGAAGAAACAGGGAGAGTATGAGCCTTCTGAACAACCAGAACCCGATTCAGATTATGAGAGAGCCCAACAGGCCCGACGTTTCATGATCTATGTTCATACCAAGATGATGATAGTCGATGATGAATACATTATCGTTGGATCTGCCAACATCAACCAAAGATCAATGGATGGTTCAAGAGACTCTGAGATAGCAATGGGAGCTTATCAGCCGCACCATTTAGCTACAAGACAGCCGGCACGTGGTCAGGTCCACGGTTTCCGCATGTCATTGTGGTATGAGCACCTCGGCATGCTTCACGAATCTTTCCTTCATCCAGAAAGTGAAGAATGTATCAGTAAGGTGAATCAGATTGCTGACAAATATTGGGATCTTTATTCCAACGATTCGCTCGAGCATGACCTTCCTGGACACTTGCTTCGCTATCCGGTTGGAATTTCTAGTGAAGGACAAGTTACAGAGCTGCCTGGATTTGAATTCTTCCCTGATACCAAGGCTCGGATTCTCGGCGCCAAAGCTGATTACCTCCCTCCTATCCTCACTACTTAG 2427 0.4376 MAQIHLHGTLHATIYEVDKLNAGGGGNIFSMIRQNIEETVGIGKGVTQLYATIDLEKARVGRTRIIEKEHTNPKWYESFHIYCAHLASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEIDRWVEILDTERNPIESGSKIHVKLQYFDVTKDRSWARGIQSAKFPGVPYTFFSQRQGCKVSLYQDAHVPDNFVPKISLSGGKTYQPHRCWEDIFDAITNAKHLIYITGWSVYTEISLVRDSRRPKAGGDATLGELLKKKASEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETAQFFDGTDVHCVLCPRNPDDGGSVIQDLQISTMFTHHQKIVVVDSELPGGGSDKRRIMSFVGGLDLCDGRYDTAFHSLFRTLDTAHHDDFHQPNFPGAAITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDILLNLRELEDSIIPPSPVMFPDDQETWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFAWSGDDIKPEEIGALHVIPKELSLKIVSKIEAEEKFTVYVVVPMWPEGVPESASVQAILDWQRRTMEMMYKDIVQALRVKGIEEDPRKYLTFFCLANREVKKQGEYEPSEQPEPDSDYERAQQARRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGSRDSEIAMGAYQPHHLATRQPARGQVHGFRMSLWYEHLGMLHESFLHPESEECISKVNQIADKYWDLYSNDSLEHDLPGHLLRYPVGISSEGQVTELPGFEFFPDTKARILGAKADYLPPILTT* 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0546 808 Pfam C2 domain 9 127 IPR000008 -
Tpr4g0546 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 326 364 IPR001736 GO:0003824
Tpr4g0546 808 PANTHER PHOSPHOLIPASE D 2 808 IPR015679 -
Tpr4g0546 808 PIRSF PLD_plant 1 808 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Tpr4g0546 808 SUPERFAMILY Phospholipase D/nuclease 447 738 - -
Tpr4g0546 808 Gene3D Endonuclease Chain A 480 704 - -
Tpr4g0546 808 SMART C2_3c 9 124 IPR000008 -
Tpr4g0546 808 Pfam Phospholipase D C terminal 727 798 IPR024632 -
Tpr4g0546 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 654 681 IPR001736 GO:0003824
Tpr4g0546 808 Pfam Phospholipase D Active site motif 326 364 IPR001736 GO:0003824
Tpr4g0546 808 Pfam Phospholipase D Active site motif 655 681 IPR001736 GO:0003824
Tpr4g0546 808 Gene3D C2 domain 7 159 IPR035892 -
Tpr4g0546 808 CDD PLDc_pPLDalpha_2 492 701 - -
Tpr4g0546 808 PANTHER PHOSPHOLIPASE D ALPHA 1 2 808 - -
Tpr4g0546 808 Gene3D Endonuclease Chain A 199 443 - -
Tpr4g0546 808 SMART pld_4 654 681 IPR001736 GO:0003824
Tpr4g0546 808 SMART pld_4 326 364 IPR001736 GO:0003824
Tpr4g0546 808 ProSiteProfiles C2 domain profile. 1 125 IPR000008 -
Tpr4g0546 808 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 150 IPR035892 -
Tpr4g0546 808 SUPERFAMILY Phospholipase D/nuclease 151 446 - -
Tpr4g0546 808 CDD C2_plant_PLD 2 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0546 Tpr-Chr4 5154058 5158205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0546 1 808 Phospholipase D Gene Family (Wang group) AT1G52570 81.852 0.0 1412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0546 K01115 - gmx:100786410 1533.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g0546 4 5154058 5158205 Tpr7g5007 7 57718251 57723501 ECH
Tpr4g0546 4 5154058 5158205 Tpr4g0546 4 5154058 5158205 ECH
Tpr7g5007 7 57718251 57723501 Tpr4g0546 4 5154058 5158205 PCT