Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0538 ATGGATCCATCTTTTGATATGTTGTGTGATGTTGTTCCTGGAAGAGAATCATGGAGGGTTAAGGTTCGGGTTATTCGTGTTTGGGAAGTTCCTAATTTCTTGAATCATGACCAGACTAATTCTATTGAAATGGTCTTGATTGATGAAAAGGGAGGAAAGATTCATGCGACTATTAGGAAACAACTGCTGTATCTTTTTAAGCTTAAGATTATGGAGGGTCAGACTTATAAACTTTCATACTTGGCTGTTGCACCCAGCAGTGGTAGCTATCGTACCACTCTGCATCCATACAAGTTTTTTTTCCAGATGAAAACCAAAGTCCAAATCTGTGAGGGTGATTCCATACCAAAGTTTGGGTTGTCTTTTAGCAATATCTCCGATGTTTTATCCCATACGGTTGATTATGATTACTTGGTTGATGTGCTGGGTATAATGACTGGTATATCTGTTGAGAGAGAATACATTAAAGATGGAAGGGTTACAAAAATGATAGTCATGGAATTGACTGATAAGAGTGGAAAATGTGAAGTTGCATTGTTTGGAGATTATGTTGATATTCTTCAGAAGAAAATGGAGAATACTTCCGAAGGATTGCCGGTTGTAGCTGTCCAGTTTGCGAAGCTGAAGATTTTTAGAGATAAAGTTTCTCTACAAAATGTCATGAATACTACTCAGATTTTCATTAATCCTGATATTCCAGAGGCTGTCGAATTAAAAATTGGGGATATTTCTTCTGGGCTTGACCAAACCGGGGTTGTTCCTGTACTTGGTCCTCGTGCCAAACCTACTTTTGAAGAAGATTTTATCCGTGATAATCCAAAAAGCACTATCTCAAGTCTGTTGGGTTCATCTGAAGATGGTATATATGTTGTGCTGGGTATAATCAGTGATTTGGTTGAAGGGCAGGACTGGTGGTATCCTGCCTGTCGTTGTCATAGAATTGTCAGTGCTGATTCTGGTGCCTATTATTGTAAAGGGTGTGTAAAGCATGTCTTTCATATGGTGCCTAGGTTTAAAGTCAAGTTTCGTGTTCGCGATGCTACTGGTGATGCTATTTTTGTTGTTTTCGATTCGGATATGTTCAACCTTATTGGAAAACAGTGTAGTGATCTGGTTTCTGCTGGAAAGGCTGAAAATGCTGGTTTCTATCCAAGTGAACTGAAGGATTTGGTTGGTACTAAACTGCTTTTCAAGGTTGAGAAATCTTCCTCAACCCATGTTTTATTTGATGGTTCATTTAGGGTCAAGCGAATTTGCAATGATGCATCCGTTATGCAAATTTTCAATCCTTCTCTGCTGCAAGTTTCTACCAAAGAGGTTGTTATAGATTATTAA 1335 0.385 MDPSFDMLCDVVPGRESWRVKVRVIRVWEVPNFLNHDQTNSIEMVLIDEKGGKIHATIRKQLLYLFKLKIMEGQTYKLSYLAVAPSSGSYRTTLHPYKFFFQMKTKVQICEGDSIPKFGLSFSNISDVLSHTVDYDYLVDVLGIMTGISVEREYIKDGRVTKMIVMELTDKSGKCEVALFGDYVDILQKKMENTSEGLPVVAVQFAKLKIFRDKVSLQNVMNTTQIFINPDIPEAVELKIGDISSGLDQTGVVPVLGPRAKPTFEEDFIRDNPKSTISSLLGSSEDGIYVVLGIISDLVEGQDWWYPACRCHRIVSADSGAYYCKGCVKHVFHMVPRFKVKFRVRDATGDAIFVVFDSDMFNLIGKQCSDLVSAGKAENAGFYPSELKDLVGTKLLFKVEKSSSTHVLFDGSFRVKRICNDASVMQIFNPSLLQVSTKEVVIDY* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0538 444 CDD RPA1_DBD_B_like 140 239 - -
Tpr4g0538 444 Gene3D - 270 427 IPR012340 -
Tpr4g0538 444 CDD RPA1_DBD_C 277 399 IPR013955 -
Tpr4g0538 444 CDD RPA1_DBD_A_like 19 107 - -
Tpr4g0538 444 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 375 - -
Tpr4g0538 444 Pfam Replication factor-A C terminal domain 299 405 IPR013955 -
Tpr4g0538 444 Gene3D - 114 241 IPR012340 -
Tpr4g0538 444 Pfam Domain of unknown function DUF223 43 138 IPR003871 -
Tpr4g0538 444 SUPERFAMILY Nucleic acid-binding proteins 120 239 IPR012340 -
Tpr4g0538 444 SUPERFAMILY Nucleic acid-binding proteins 4 113 IPR012340 -
Tpr4g0538 444 Gene3D - 6 110 IPR012340 -
Tpr4g0538 444 PANTHER REPLICATION FACTOR A 1, RFA1 22 375 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr4g0538 444 SUPERFAMILY Nucleic acid-binding proteins 281 423 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0538 Tpr-Chr4 5089796 5092225 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0538 13 365 Core DNA Replication Machinery Family AT2G06510 23.641 7.93e-23 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0538 - - mtr:MTR_8g062030 514.612