Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0511 ATGGATGACAATTCAGGTAACAATGGAACCAGTGGAATTGTTTTGGACATAAACAATGATGTCCCTAACATTAGTGAAGAAGACTCAAGCTCCTACCCTACTTCTTCTTTCTTGCAAAAGTTGGTAGCTGAGGTGATAGGCACATATTTCTTGATATTTGCTGGTTGTGCTTCTGTCGTGGTGAACAAGAACAACGATAACATCGTGACGCTTCCAGGGATCTCAATGGTTTGGGGACTTGCTGTAATGGTGTTAGTTTACTCTCTTGGTCATATCTCCGGCGCTCATTTCAATCCTGCAGTTACCATTGCATTTGCTACTACAAGAAGGTTTCCCTTCAAACAGGTGCCAGCTTATGTAGCAGCTCAAGTCCTTGGATCTACACTTGCAAGTGGAACTCTTAGACTATTATTTAGTGGCAAACATAATCAGTTTGTAGGAACACTTGCAGCTGGGTCTAATCTTCAAGCTTTTGTGATGGAATTCATAATCACTTTTTATCTTATGTTTATCATATCTGGAGTTGCCACCGATAATAGAGCAATTGGTGAGTTGGCTGGGATTGCTGTTGGATCTACAGTTCTTTTGAATGTGTTGTTTGCAGGGCCAATCACAGGAGCATCAATGAATCCAGCAAGAAGCATAGGACCTGCAATTGTACACAATGAATACAAAGGAATATGGATATACTTGGTGTCTCCAATTGTAGGAGCCTTGGCCGGTGCATGGGCTTATGACGTCGTTCGGTACACAAAAAAGTCAGTTCGTGAGATCACCAAGAGTGCATCTTTCCGAAGAGCAGCAGAGCCATAG 813 0.4231 MDDNSGNNGTSGIVLDINNDVPNISEEDSSSYPTSSFLQKLVAEVIGTYFLIFAGCASVVVNKNNDNIVTLPGISMVWGLAVMVLVYSLGHISGAHFNPAVTIAFATTRRFPFKQVPAYVAAQVLGSTLASGTLRLLFSGKHNQFVGTLAAGSNLQAFVMEFIITFYLMFIISGVATDNRAIGELAGIAVGSTVLLNVLFAGPITGASMNPARSIGPAIVHNEYKGIWIYLVSPIVGALAGAWAYDVVRYTKKSVREITKSASFRRAAEP* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0511 270 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 267 - -
Tpr4g0511 270 SUPERFAMILY Aquaporin-like 35 258 IPR023271 -
Tpr4g0511 270 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr4g0511 270 PRINTS Major intrinsic protein family signature 78 102 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr4g0511 270 PRINTS Major intrinsic protein family signature 115 134 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr4g0511 270 PRINTS Major intrinsic protein family signature 160 178 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr4g0511 270 PRINTS Major intrinsic protein family signature 191 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr4g0511 270 PRINTS Major intrinsic protein family signature 228 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr4g0511 270 Gene3D Glycerol uptake facilitator protein. 14 262 IPR023271 -
Tpr4g0511 270 CDD MIP 39 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr4g0511 270 PANTHER AQUAPORIN NIP2-1 1 267 IPR034294 -
Tpr4g0511 270 ProSitePatterns MIP family signature. 96 104 IPR022357 -
Tpr4g0511 270 TIGRFAM MIP: MIP family channel proteins 43 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr4g0511 270 Pfam Major intrinsic protein 34 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0511 Tpr-Chr4 4850375 4852212 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0511 39 270 Major Intrinsic Protein MIP AT5G37810 60.776 1.03e-101 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0511 K09874 - gmx:100798526 415.231