Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0495 ATGGAGGATTCATCATGGGAATATTTTCATCTTCACACGGAAATGGAATGCGGTGATGATTATTTCATGGAAAAGTACAACGCCGTTAACATTGACGGTGACGATTTTCTTAGAGAGATTCTGTTACAGACACCAGAACAAAGTTTAATGAATTCAGAAAGTGAAAACGGTTCTGTTACTGTTAACGTTAACGGCGATGTTGACGTTGCTGGAAACATGGTTAAAAGTAACAGTTCAAATTCAATCGTGTCTCAAAAACAAGAACAACAACAACGTTTGAAATCGAAAAAGGTTGATGTTCCTCGTAGAAGTTCTTCGCCAACGACATACATTTTGTCTTTTGATAATTCAACTATGGTACCAGCAACACCAGAACCTTGTGTTAATTTGGAAGGTGGTAAACGCGATTATTGTTCTAAATCTGATTATTCTAAGAAGAATAAACAGAGTAGTGAAATTAAGAAAACAAATACTAAAAATCAAGGGGTGAAGAAAGCAAGAAGCGGTACTCAGTGTGTTGATCATGTAATTGCAGAGAGAAAAAGGAGACAACAATTGACTGAGAGATTCATTGCACTTTCAGCCACCATTCCTGGCTTGAGCAAGACAGACAAAGCTTCAATACTCCGTTCAGCAATTGATTATGTAAAACAACTTCAAGAACGTGTTCATGAGCTAGAAGAGAAACAAGACAAAAATGTTGGTCTCACATCATCGGTGATGGTCCTCAACAAAATTAATTCATGTGGAATTAATAATAATATTGAAGGCACAAATTCTCGTGACACAAGTTGTGATGGTGATTGTAGCAACATTTTCCCAGAGATTGAAGTAAGAGTTATGGGAAAGGAAGTGCTTATTGAAATTCATTGTGAGAAACAAAGTGGAATTGAGCTCAAATTACTTGATCACATTGAAAATCTTCAACTCTTTGTCACTGGTAACAGTGTCTTGCCTTTTGGAAAATCTGCTATTTCCATTACTATTATAGCTCAGATGGGTGATGGATACAAAGTGAAAGTGCATGATCTGGTGAAAAGCATTAGGAATCAAGTTTGTTGGAAGCTTCTTTCCACGTGCTAG 1083 0.3675 MEDSSWEYFHLHTEMECGDDYFMEKYNAVNIDGDDFLREILLQTPEQSLMNSESENGSVTVNVNGDVDVAGNMVKSNSSNSIVSQKQEQQQRLKSKKVDVPRRSSSPTTYILSFDNSTMVPATPEPCVNLEGGKRDYCSKSDYSKKNKQSSEIKKTNTKNQGVKKARSGTQCVDHVIAERKRRQQLTERFIALSATIPGLSKTDKASILRSAIDYVKQLQERVHELEEKQDKNVGLTSSVMVLNKINSCGINNNIEGTNSRDTSCDGDCSNIFPEIEVRVMGKEVLIEIHCEKQSGIELKLLDHIENLQLFVTGNSVLPFGKSAISITIIAQMGDGYKVKVHDLVKSIRNQVCWKLLSTC* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0495 360 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 5 350 - -
Tpr4g0495 360 SMART finulus 176 225 IPR011598 GO:0046983
Tpr4g0495 360 PANTHER BHLH TRANSCRIPTION FACTOR 5 350 - -
Tpr4g0495 360 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 174 231 IPR036638 GO:0046983
Tpr4g0495 360 Coils Coil 209 229 - -
Tpr4g0495 360 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 219 IPR011598 GO:0046983
Tpr4g0495 360 Pfam Helix-loop-helix DNA-binding domain 172 220 IPR011598 GO:0046983
Tpr4g0495 360 Gene3D - 160 233 IPR036638 GO:0046983
Tpr4g0495 360 MobiDBLite consensus disorder prediction 76 106 - -
Tpr4g0495 360 MobiDBLite consensus disorder prediction 141 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0495 Tpr-Chr4 4675552 4682031 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0495 145 353 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.857 1.56e-41 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr4g0495 HLH 7.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0495 - - mtr:MTR_4g009540 430.639