Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0494 ATGATGAACATTGAAAACTTCTCACACGACCCTACACCAACAACCACCACCACCACCTTAAACATTCCGAAACACAACCCACTTCAACAAACATCTCTCGAAGGAATCGCTGCTATTGTAGGAGAACAAATCCTCTACGGACCCCACAACACCAAAACGACACAACCAACTTGCGTTTCACACCTCAAAACCAAAACAGAACAAAAAAAAAACTACAGAGGAGTTAGAAAACGACCATGGGGAAGATGGTCAGCTGAAATACGCGACAGAGTCGGTCGTTGTCGTCATTGGTTAGGAACATTTGATACTGCTGAAGAGGCGGCGCGTGCTTATGACGCGGCAGCTAGGCGATTGAGAGGTTCTAAAGCAAGAACTAATTTTAAGATACCTTTTGTTTTGCCTCTACCGTTATCGTCGAACTCCAACCACTCAAACGAGTCTTGTTCGAGTTCGAATGGTAACGGTAAGAAAAAACTTGTGCGTAATAGTGTTAAGAAGTGTTGTGTTGTTAATTCTGTGGGAGAATTGTTTAGTGGTGTGCCTGAAGTTAGAAGAGAAAGAGATTATGGTAATAATAATGGGAGTGTTGGATTTGGTGGTGGTAGAAACAGTGCTGGAATGGTGGTGTAG 630 0.4317 MMNIENFSHDPTPTTTTTTLNIPKHNPLQQTSLEGIAAIVGEQILYGPHNTKTTQPTCVSHLKTKTEQKKNYRGVRKRPWGRWSAEIRDRVGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFKIPFVLPLPLSSNSNHSNESCSSSNGNGKKKLVRNSVKKCCVVNSVGELFSGVPEVRRERDYGNNNGSVGFGGGRNSAGMVV* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0494 209 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Tpr4g0494 209 PRINTS Ethylene responsive element binding protein signature 94 110 IPR001471 GO:0003700|GO:0006355
Tpr4g0494 209 Pfam AP2 domain 71 120 IPR001471 GO:0003700|GO:0006355
Tpr4g0494 209 SMART rav1_2 71 134 IPR001471 GO:0003700|GO:0006355
Tpr4g0494 209 CDD AP2 70 129 IPR001471 GO:0003700|GO:0006355
Tpr4g0494 209 Gene3D AP2/ERF domain 70 129 IPR036955 GO:0003700|GO:0006355
Tpr4g0494 209 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF084 26 187 - -
Tpr4g0494 209 SUPERFAMILY DNA-binding domain 71 129 IPR016177 GO:0003677
Tpr4g0494 209 ProSiteProfiles AP2/ERF domain profile. 71 128 IPR001471 GO:0003700|GO:0006355
Tpr4g0494 209 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 26 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0494 Tpr-Chr4 4662020 4662693 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0494 11 134 AP2-EREBP Transcription Factor Family AT1G80580 55.882 3.55e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tpr4g0494 AP2 3.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0494 - - cam:101490906 234.572
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g0494 4 4662020 4662693 Tpr4g0494 4 4662020 4662693 ECH