Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0480 ATGGCAAGACCACAACAACGTTATCGAGGTGTTCGTCAGAGACATTGGGGCTCTTGGGTCTCTGAAATTCGTCACCCTTTATTGAAGACAAGAATATGGCTAGGAACATTTGAAACAGCAGAGGATGCAGCAAGAGCATATGATGAAGCAGCAAGATTAATGTGTGGACCAAAAGCACGTACCAATTTCCCATACAACCCAAATGGACCACAATCATCTTCATCTAAGCTTCTTTCAGCTACTTTAACTGCAAAGCTAAATAAGTGTCACATGGCTTCTCTTTCTCTTCAAATGTCTAAACAACAATCACTACCACAAAAAGAACCACAACATGTTTCAACACAAAGTTTCAATTCTTCCATTAATAATAACACTTTTGTCTATGGTAATGACATTGGTGGAACAAGTGGTGAAACTAGCTTAATTAGATGGCTTGATGAAGGAAATAGTTTTGTTGGTTTTGAAGGTCATCAACAAGTTGAAGTTTCTAATCAACAATTTCAACCTGTTCTTGAAGATGATCATATTGAACAAATGATTCAAGAGTTGCTTGATTCTGGTTGTTCAATTGAGATTTGTTCCGTCGGTTCATCTTAG 597 0.3752 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNGPQSSSSKLLSATLTAKLNKCHMASLSLQMSKQQSLPQKEPQHVSTQSFNSSINNNTFVYGNDIGGTSGETSLIRWLDEGNSFVGFEGHQQVEVSNQQFQPVLEDDHIEQMIQELLDSGCSIEICSVGSS* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0480 198 MobiDBLite consensus disorder prediction 97 116 - -
Tpr4g0480 198 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Tpr4g0480 198 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Tpr4g0480 198 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Tpr4g0480 198 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Tpr4g0480 198 PANTHER ETHYLENE RESPONSE FACTOR 1 194 - -
Tpr4g0480 198 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Tpr4g0480 198 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Tpr4g0480 198 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 194 - -
Tpr4g0480 198 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Tpr4g0480 198 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0480 Tpr-Chr4 4567644 4569390 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0480 1 195 AP2-EREBP Transcription Factor Family AT5G25190 61.538 3.74e-73 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr4g0480 AP2 8.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0480 - - gmx:100777851 254.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g0480 4 4567644 4569390 Tpr4g0480 4 4567644 4569390 ECH