Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0463 ATGGGTGAAGAGGTGAAATCTGTCGTTGTTCCAGAGTCTGTATTGAAGAAGCAGAAGAGGGAAGATGAATGGGCTTTAGCTAAAAAGCAAGATTTTGAAGCTGCCAAGAAGAAAAGAGCAGAGAATCGTAAATTGATCTATAGCAGAACTAAACAGTATTCTCAGGAGTATGAGCAACAGGATAAGGAGTTGATTCGATTGAAACGAGAAGCAAAGCTAAGAGGTGGATTTTATGTTGATCCAGAGGCTAAGCTCTTGTTTATTATTCGCATTCGTGGTATTAATGCCATGGACCCCAAGACAAGAAAGATCCTGCAACTATTTCGATTGAGACAAGTTTTCAATGGTGTTTTCCTTAAAGTTAACAAAGCAACAATGAACATGTTGCACAGGGTTGAGCCTTATGTTACTTATGGGTACCCTAATTTGAAGAGTGTAAGGGAACTCATTTATAAGAGAGGTTATGGAAAGCTAGACAGGCAGCGTACTCCTCTCACCGACAACTCCATTATTGAGCAGGGACTGGGAAAGCATGGTATCCTATGCATTGAAGATCTTATCCACGAGATTTTGACTGTTGGACCGCATTTTAAGGAGGCAAATAACTTCCTCTGGCCATTCAAGCTCAAGGCTCCTTTGGGAGGCTTAAAGAAGAAGAGGAACCACTATGTTGAAGGAGGCGATGCTGGTAATCGGGAGAATTACATCAATGAGCTCATCAGGAGAATGAATTAA 735 0.4122 MGEEVKSVVVPESVLKKQKREDEWALAKKQDFEAAKKKRAENRKLIYSRTKQYSQEYEQQDKELIRLKREAKLRGGFYVDPEAKLLFIIRIRGINAMDPKTRKILQLFRLRQVFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDRQRTPLTDNSIIEQGLGKHGILCIEDLIHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0463 244 ProSitePatterns Ribosomal protein L30 signature. 104 136 IPR018038 -
Tpr4g0463 244 TIGRFAM uL30_euk: 60S ribosomal protein uL30 11 244 IPR005998 GO:0000463|GO:0003735|GO:0022625
Tpr4g0463 244 Pfam Ribosomal L30 N-terminal domain 10 81 IPR012988 -
Tpr4g0463 244 PANTHER 60S RIBOSOMAL PROTEIN L7-RELATED 8 244 - -
Tpr4g0463 244 PANTHER 60S RIBOSOMAL PROTEIN L7 8 244 IPR039699 -
Tpr4g0463 244 CDD Ribosomal_L7_archeal_euk 85 244 IPR035808 -
Tpr4g0463 244 Gene3D - 190 244 IPR036919 -
Tpr4g0463 244 Gene3D - 85 189 IPR036919 -
Tpr4g0463 244 Coils Coil 50 70 - -
Tpr4g0463 244 SUPERFAMILY Ribosomal protein L30p/L7e 85 244 IPR036919 -
Tpr4g0463 244 Pfam Ribosomal protein L30p/L7e 86 136 IPR016082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0463 Tpr-Chr4 4439435 4441761 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0463 1 244 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 81.967 1.28e-154 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0463 K02937 - gmx:100813342 424.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g0463 4 4439435 4441761 Tpr4g0463 4 4439435 4441761 ECH