Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0441 ATGGACAACGACGCGGTAGAATTTGATATTGGGTTGGGAGGGGAATACGAGGAGGAGCCTATTGAGATCGAGGAAGAGGACGATGATGAAGAAGAAGAAGAGGAAGATGATGAATTGGATTTGGTAGAAAGCAGCGGTGCAGTGTATTTTCCAGAGGCGGGGGATCTGGAACCTTCGGAGGGCATGGAATTCGAGTCTGAAGAGGCTGCAAAGGCTTTCTATAATTCGTATGCTCGTCGTGTTGGGTTTAGTACTCGTGTCAGCTCATCTCGTCGTTCACGTCGTGACGGAGCCATCATTCAGAGACAATTCGTGTGTGCAAAGGAAGGATTTCGCAATTTGAACGAGAAACGCACGAAAGATAGAGAGATCAAAAGGCCAAGAACAGTTACTCGAGTTGGATGCAAGGCCTCTTTATCTGTTAAAATGCACGATTCTTCTGGGAAATGGATCGTATCCGGTTTCGTTAGAGAACACAATCACGAACTTGTTCCACCTGATCAGGTTCACTGCCTTCGTTCTCACAGGCAAATATCTGGATCTGCAAAGACACTAATCGACACTCTACAGGCTGCTGGTATGGGTCCTCGTAGAATTATGTCTGCACTTATCAAAGAGTATGGCGGTATTAGCAAAGTCGGCTTTACCGAGGTTGACTGTAGGAATTACATGAGGAATAATCGCCACAGAAGTTTACAGGGTGACATTCAACTTGTTCTTGATTATTTGAGACAAATGCATGCTCAAAACCCTAATTTTTTCTTTGCTGTTCAAGGTGATCTTGATGATGAGGATCATTCCATCACCAATGTTTTCTGGGCTGATCCCAAGGCAAGGTTGAATTACACTTATTTTGGTGATACTGTCACTTTTGACACTACTTACCGCTCTAATAGGTATCGTTTACCCTTTGCTCCCTTTACTGGTGTTAACCATCATGGTCAACCTGTTCTTTTTGGTTGTGCTTTTCTAATTAATGAATCTGAAGCTTCATTTGTCTGGCTTTTCAAGACATGGCTTATGGCCATGTCTGGACGCCCCCCACTCTCAATAACTACCGACCATGATTCTGTTATTCAGTCCGCCATTACGCAAGTGTTCCCCAGCACTCGCCACCGTTTCTGCAAGTGGCACATCTTTAAGCAATGCCAGGAGAAGTTGTCTCACATTTTCCTCCAGTTTCCAAATTTTGAAGCCGAGTTTCACAAATGTGTTAACTTGACAGACTCAATTGATGAATTCGAGTCTTGCTGGTCCAAACTTGTAGATAGATATGTTCTCAGGGAGGTTGAATGGCTTCAAGCAATACATTCTGCTTGCAGGCATTGGGTACCTGTATATTTGCGAGACACATTTTTTGCAGAAATGTCCATCACTCAACGAAGTGATAGCATGAACTCTTACTTTGATGGCTATGTGAATGCTTCAACCAGTTTAAATCAGTTCTTTAAGCTTTATGAGAAAGCGCTTGAAAGTCGCAACGAGAAAGAAGTAAGAGCAGATTATGACACAATGAATACTTTGCCAGTATTGAGGACCCCCTCTCCGATGGAGAGGCAAGCATCTGAACTTTACACAAGAAAAATTTTCATGAGGTTCCAAGAGGAGTTAGTTGGCACACTAACATTCATGGCATCCAAAGCTGAGGATGATGGGGAGGTCATTACATATAACGTAGCTAAATTTGGAGAGGATCATAAAGCATTCAACGTTAGATTCAATGTGTTGGAAATGAAAGTGACTTGCAGTTGTCAGATGTTTGAGTTTTCAGGCCTTCTTTGCAGGCATATTCTGGCAGTGTTTAGAGTTACCAATGTCCTTACTCTCCCATCTCATTATATACTGAAACGCTGGACAAGAAATGCCAAGAGCAATGTCATTTTAGAAGAACATGCTAGTGATGTATATACTTACTATTTGGAATCTCACACAGTTAGATATAATACTCTCCGACACAGGGCCTTTAAATTTGTTGATAAAGGTGCAAGCTCCCCTGAAACTTATGATGTTGCAAAGGATGCTTTACAAGAAGCTGCAAAAAGAGTCGCACAGGTAATGCGAAAGGAGGGGAGAACTCCCATCAGCAATGGGAAGGTCAGGAGTCACTTGCTGAATGATGAAAATCGTGCTAATTACACTAGTGGCTGCCAGGATGAAAGCTTGGGCGAGCATATGAATAAGGATGATATGGATAAGCATATTGCAAAACTTACAAATGAGCTTGAATGTGCAAATCGGAAGTGTGAAGTTTACCGTTCCAACTTGCTCTCTGTTTTGAAAACTGTTGAGGATCACAAGTTAGAGTTGTCAGTAAAGGTGGAAAATATCAAGATAAGCATGAAAGACGACCTCTGA 2355 0.4234 MDNDAVEFDIGLGGEYEEEPIEIEEEDDDEEEEEEDDELDLVESSGAVYFPEAGDLEPSEGMEFESEEAAKAFYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRTKDREIKRPRTVTRVGCKASLSVKMHDSSGKWIVSGFVREHNHELVPPDQVHCLRSHRQISGSAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRHRSLQGDIQLVLDYLRQMHAQNPNFFFAVQGDLDDEDHSITNVFWADPKARLNYTYFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPVLFGCAFLINESEASFVWLFKTWLMAMSGRPPLSITTDHDSVIQSAITQVFPSTRHRFCKWHIFKQCQEKLSHIFLQFPNFEAEFHKCVNLTDSIDEFESCWSKLVDRYVLREVEWLQAIHSACRHWVPVYLRDTFFAEMSITQRSDSMNSYFDGYVNASTSLNQFFKLYEKALESRNEKEVRADYDTMNTLPVLRTPSPMERQASELYTRKIFMRFQEELVGTLTFMASKAEDDGEVITYNVAKFGEDHKAFNVRFNVLEMKVTCSCQMFEFSGLLCRHILAVFRVTNVLTLPSHYILKRWTRNAKSNVILEEHASDVYTYYLESHTVRYNTLRHRAFKFVDKGASSPETYDVAKDALQEAAKRVAQVMRKEGRTPISNGKVRSHLLNDENRANYTSGCQDESLGEHMNKDDMDKHIAKLTNELECANRKCEVYRSNLLSVLKTVEDHKLELSVKVENIKISMKDDL* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0441 784 SMART 26again6 580 607 IPR006564 GO:0008270
Tpr4g0441 784 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 37 757 IPR031052 GO:0006355
Tpr4g0441 784 MobiDBLite consensus disorder prediction 1 41 - -
Tpr4g0441 784 Coils Coil 727 754 - -
Tpr4g0441 784 Pfam FAR1 DNA-binding domain 73 165 IPR004330 -
Tpr4g0441 784 Pfam MULE transposase domain 289 381 IPR018289 -
Tpr4g0441 784 Pfam SWIM zinc finger 557 603 IPR007527 GO:0008270
Tpr4g0441 784 ProSiteProfiles Zinc finger SWIM-type profile. 569 605 IPR007527 GO:0008270
Tpr4g0441 784 Coils Coil 668 688 - -
Tpr4g0441 784 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 37 757 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0441 Tpr-Chr4 4217611 4221434 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr4g0441 MULE 8.8e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0441 - - gmx:100793442 1331.62