Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0429 ATGGAATATGGTGGCGGCCTAGTCGGAGACGGTGGTGTGTTTGGGAACATGGTGGGAGGAGGAGGAGAAGCAACAGATATGATTGAGGAGCTGTTGGTAGATGGTTGTTGGATTGAAGCAAGTGAGAATAATATGATGAGGATGCAGTCGCAGACGCAGACACACTACATGAGTACCAATAATAATAATAATAATAATAATATTCCAATTGGAATGGGAGAGGGAGACCACTTTAATAATCATCATCATAATCAAATTGAATGCAATGTTCCAACAGATCATGATGATGATCAAGAAAGTGGTTTTGTTGTTGGGAAGAGATGGTGGATTGGCCCTAGGGCTAATCCAGGTCCATCAACTTCTGTCAAAGAGAGATTAGTAGTAGCTGTTGGTTACTTAAAAGAGTACACAAAGAATTCTTCAAACAACGTTCTCATTCAGATATGGGTACCAGCTCTAAGGAGGAGATCACCTCTTCTAATTCACAATCACTACTTGCACGAGTCTTCATCATCTGCTCCAGTTTCTGTTAATCCAAACACGAATGTTCATGTTCGTTTCTTCAGAAGCCATGAGTATCCGCGGCATCAGCAGCAGCAATATGGATCTCTTTTTGCACTTCCCGTTTTTGAAAGAGGAAGCGGAACATGCCTCGGTGTGATTGAGTTTGTTATCACCAACCAAACTGTTGTCAATTACCGTCCACAACTTGATCATCTCTCCAATGCTCTTGAGGCTGTTGATTTTAGGAGTAGTCACAACATCAATATTCCATCGGCAGTAAAGGTATTTGAGGAGTTGTACGAAGCTGCTGTGAACGAGATCGTAGAGGTGTTGGCATCGGTGTGCAAGACGCACAATTTGCCATTGGCACTAACATGGGCTCCTTGCATACAACAACAAGGAGGAGGAGTTAGAGGAAAAGGAACCGCCGGTCCAGCAGGATGCGGTGTTTCAGTCGCAGTTCCAACCGATCAAATGAATAATAATCAGATGATGATGAATTGTGTTTCCACCGTTGATTCAGCTTGTTATGTTGGTGACATGGAGGTATTGGGATTCCAAGAAGTGTGCAGTGAGTATCACCTTTTCAATGGACAAGGAATAGTAGGAACAGCCTTCACAACAACCAAACCTTGTTTTGCTATTGACATTACTGCCTTCAGCAAAGCCGAATACCCACTTGCTCACCACGCTAACATGTTTGGCTTACACGCCGCGGTTGCAATTCCACTTAGGAGTGTCTACACCGGATCCGCTGCTGATTTTGTTTTGGAGTTTTTCCTTCCTAAAGATTGTCGTGATCCCGAACAACAGAAACACATGCTCAACTCATTATCCCTAGTTGTTCAGCAAGCTTGTAGAAGCTTGCATTTGCATGTGGTCATGGATGATACTGACAATGCTAATCATCATGATCATGACCAAGATCAATTCACCTTCCCAACAACAACAACAAATAATTACATGCCTTCTTCTGCTTCTGATGCTGCTACTGCATCACTGTCACAAGTTGATGCAACATCAGGTTGCTCAACAAAAGACACATCATCATCATGTTCTTGGATTGCACACATGATGGAGGCACAACACAAAGGAAAAGGTGTGTCGGTGTCTTTGGAATATCTTCAAGAGCCTAAAGAAGAGTTCAAAGTCACAACATGCAACTGGGACAGAGAGAGGGAGGGCAATTCTGTCTTTTCAGAATTCGGCCAAGTTCTGCAGCATGACCAGAGCAGTAATTCAAGAGCAAGTGTTGAAGCTGGGGAAGAATCTGGTGGATGCGGTGTTGGTGGTGGTCGTCGGTCATCTTCTTCTTCCAGTGGGAGAAAGTCAGGTGACAAGCGAAGAACCAAGGCGGAGAAGACTATTAGCTTGCCGGTTCTGAGACAATACTTTGCCGGAAGCCTAAAAGACGCCGCAAAGAGCATCGGTGTATGTCCTACCACTCTGAAAAGGATATGCAGACAGCATGGGATTACAAGATGGCCTTCAAGGAAAATAAAGAAAGTGGGACACTCTTTGAAGAAGCTTCAACTGGTGATTGATTCCGTTCAAGGCGCCGAGGGTGCGATACAGATTGGCTCTTTCTATGCAAGCTTTCCAGAGTTGAGCACTGCAACTGCTAATGGTGGTGGTGGTGGTGGTGGTGGTGGTGATCATAACAACGTTAACAACAGCTTCTATAACAGCCATGGAGATGGGGTAGTTAATGGTTTGAAATCTCCACCCTCTGCTTGCAGTCAGACACATGCAGCAGGAAACAAACTTATCACCGCTAACATCATTAATGGAGATCATCATCATCATCATCATGTTATGATGACAGAAAACCCTGCAGCTCCTTTAGGAGCTGATGCATTAATGATGCATGGATCCAATATCAATATCCAAAATTACCAGCAGCTGCAGGAGGATCAGGATACTAAACAATTACTGCTACATTTCAACAATAACAATCAAACCCTACCTCCAAGGCCAACTGCAGGAGCTTGGAACAACAACAATAATTCATCATCATCAGGACTACTAGAAAGGGGTGCTTTCAGAGTGAAGGCGACATTCGCGGATGAAAAGATTCGGTTTAGTTTGCAAGCAATGTGGGGTTTTAGAGATTTGCAGCTTGAGATTGCAAGGCGTTTCAACCTAAATGATATGAATAATTTGGTTCTAAAGTATTTGGATGATGAAGGTGAATGGGTTGTATTATCATGTGATGCTGATCTTGAAGAATGTAAAGACTTGCACACATCTTCTCACACACGTACCATTAGACTCTCACTATTTCAAGCTTCACCTCTCAATCTACCAAACAACTTCGTCCGCAACAGTAGCAGCAGTCCATCCTCCTAG 2853 0.4357 MEYGGGLVGDGGVFGNMVGGGGEATDMIEELLVDGCWIEASENNMMRMQSQTQTHYMSTNNNNNNNNIPIGMGEGDHFNNHHHNQIECNVPTDHDDDQESGFVVGKRWWIGPRANPGPSTSVKERLVVAVGYLKEYTKNSSNNVLIQIWVPALRRRSPLLIHNHYLHESSSSAPVSVNPNTNVHVRFFRSHEYPRHQQQQYGSLFALPVFERGSGTCLGVIEFVITNQTVVNYRPQLDHLSNALEAVDFRSSHNINIPSAVKVFEELYEAAVNEIVEVLASVCKTHNLPLALTWAPCIQQQGGGVRGKGTAGPAGCGVSVAVPTDQMNNNQMMMNCVSTVDSACYVGDMEVLGFQEVCSEYHLFNGQGIVGTAFTTTKPCFAIDITAFSKAEYPLAHHANMFGLHAAVAIPLRSVYTGSAADFVLEFFLPKDCRDPEQQKHMLNSLSLVVQQACRSLHLHVVMDDTDNANHHDHDQDQFTFPTTTTNNYMPSSASDAATASLSQVDATSGCSTKDTSSSCSWIAHMMEAQHKGKGVSVSLEYLQEPKEEFKVTTCNWDREREGNSVFSEFGQVLQHDQSSNSRASVEAGEESGGCGVGGGRRSSSSSSGRKSGDKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQIGSFYASFPELSTATANGGGGGGGGGDHNNVNNSFYNSHGDGVVNGLKSPPSACSQTHAAGNKLITANIINGDHHHHHHVMMTENPAAPLGADALMMHGSNINIQNYQQLQEDQDTKQLLLHFNNNNQTLPPRPTAGAWNNNNNSSSSGLLERGAFRVKATFADEKIRFSLQAMWGFRDLQLEIARRFNLNDMNNLVLKYLDDEGEWVVLSCDADLEECKDLHTSSHTRTIRLSLFQASPLNLPNNFVRNSSSSPSS* 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0429 950 SUPERFAMILY CAD & PB1 domains 837 933 - -
Tpr4g0429 950 ProSiteProfiles RWP-RK domain profile. 610 691 IPR003035 -
Tpr4g0429 950 PANTHER PROTEIN NLP8 28 936 IPR045012 GO:0003700
Tpr4g0429 950 Gene3D - 847 933 - -
Tpr4g0429 950 Pfam RWP-RK domain 624 671 IPR003035 -
Tpr4g0429 950 SMART PB1_new 848 931 IPR000270 GO:0005515
Tpr4g0429 950 ProSiteProfiles PB1 domain profile. 848 931 IPR000270 GO:0005515
Tpr4g0429 950 Pfam PB1 domain 849 930 IPR000270 GO:0005515
Tpr4g0429 950 CDD PB1_NLP 849 930 IPR034891 -
Tpr4g0429 950 PANTHER PROTEIN NLP2 28 936 - -
Tpr4g0429 950 MobiDBLite consensus disorder prediction 578 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0429 Tpr-Chr4 4099384 4103383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0429 26 940 NLP Transcription Factor Family AT4G35270 40.647 0.0 635
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Tpr4g0429 PB1 3.8e-14 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0429 - - mtr:MTR_5g099060 1417.52