Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0428 ATGAAATCAGAAGATAATTCTTCTGATCATAGTGATGATTCTTCTTCACAAAAGAAGAAAGATCATCAACAACATAATCGTCCATGTTCTTCTTCTCTTTCTGGTAAGAAGCGAAAGCATGAAGCAGAATCATCATCAGCCAACAACAACAACAACAACAACAATGCTTGTACTGAATGCGGTAAGAAATTCTGGTCATCTAAAGCACTTTTTGGTCACATGCGTTGTCATCCTGAACGTGAATGGAGAGGCATTAATCCTCCTCCCAATTTCCGACGACGACAACAACAACAACAACAACACACTCAAAGCGCTTCTTCTTCTCACTCATTCGTCAATACAATGACTCCTAACGATCATGAAGTTGCTTCCTGTTTGATTTTCCTTGCAAATTCAAAACCCAGAGGAGTTGATGATGTAGTAGATCATCATCATCATCAAGACAATAATGGTCATTTTGTGTGTTCGTGTTGTAATAAGGTTTTTGGATCGCATCAGGCTCTTGGTGGACACAGAGCAAGTCACAAAAATGTCAAGGGCTGTTTCGCCAATACAACTCCAATAACCGCTTCCACTATTACTGCTTCTTCTTCTCATCATCATCATCATGAACAGCAACAACACCACAACCAGATGATGGTTCCGCGTGACGGTTATAATGCTGGTGATGTGGAAGGTGAAGCGGTTAATGAGATAAGTTGCGGAGGAGGAGGACACCACCAGTGTAGCATATGTTTTAGGGTGTTTTCCACCGGACAAGCACTCGGTGGTCATAAGAGGTGTCACTGGGAGAAAGGGGAAACCAGCGGAGTAGTAGCAGCAGCAGCAGCATTGGACTCTGCTGCAACAACATCCAACAACAATAAGTCTTCTTCTAGTGTTAATGTCGTTGACTTGAATTTCCCTCTTCCTCCACCACCACCGCCACCTGATGATAATGATGATCCTGATGACTCTTCTCTTGATTTGAGGTTGGGACTTTAA 984 0.4258 MKSEDNSSDHSDDSSSQKKKDHQQHNRPCSSSLSGKKRKHEAESSSANNNNNNNNACTECGKKFWSSKALFGHMRCHPEREWRGINPPPNFRRRQQQQQQHTQSASSSHSFVNTMTPNDHEVASCLIFLANSKPRGVDDVVDHHHHQDNNGHFVCSCCNKVFGSHQALGGHRASHKNVKGCFANTTPITASTITASSSHHHHHEQQQHHNQMMVPRDGYNAGDVEGEAVNEISCGGGGHHQCSICFRVFSTGQALGGHKRCHWEKGETSGVVAAAAALDSAATTSNNNKSSSSVNVVDLNFPLPPPPPPPDDNDDPDDSSLDLRLGL* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0428 327 Pfam C2H2-type zinc finger 152 176 - -
Tpr4g0428 327 Pfam C2H2-type zinc finger 57 79 - -
Tpr4g0428 327 Pfam C2H2-type zinc finger 239 264 - -
Tpr4g0428 327 SMART c2h2final6 153 175 IPR013087 -
Tpr4g0428 327 SMART c2h2final6 240 262 IPR013087 -
Tpr4g0428 327 SMART c2h2final6 55 77 IPR013087 -
Tpr4g0428 327 MobiDBLite consensus disorder prediction 283 327 - -
Tpr4g0428 327 ProSitePatterns Zinc finger C2H2 type domain signature. 155 175 IPR013087 -
Tpr4g0428 327 MobiDBLite consensus disorder prediction 283 298 - -
Tpr4g0428 327 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 82 IPR013087 -
Tpr4g0428 327 ProSiteProfiles Zinc finger C2H2 type domain profile. 240 267 IPR013087 -
Tpr4g0428 327 MobiDBLite consensus disorder prediction 92 111 - -
Tpr4g0428 327 SUPERFAMILY beta-beta-alpha zinc fingers 53 80 IPR036236 -
Tpr4g0428 327 ProSitePatterns Zinc finger C2H2 type domain signature. 242 262 IPR013087 -
Tpr4g0428 327 Gene3D Classic Zinc Finger 29 118 - -
Tpr4g0428 327 MobiDBLite consensus disorder prediction 1 50 - -
Tpr4g0428 327 MobiDBLite consensus disorder prediction 1 26 - -
Tpr4g0428 327 ProSiteProfiles Zinc finger C2H2 type domain profile. 153 180 IPR013087 -
Tpr4g0428 327 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Tpr4g0428 327 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 10 327 - -
Tpr4g0428 327 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 10 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0428 Tpr-Chr4 4075195 4076232 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0428 57 303 C2H2 Transcription Factor Family AT4G35280 45.749 9.71e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr4g0428 zf-C2H2_6 2.1e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0428 - - cam:101508937 251.136