Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0416 ATGGAGATGCAACAACTTCTTAGCATGGGTTTCCCCGACGAGTTAGCCGCCCAAGCCTTAGCTGCTACCGGTGGCAAATCCACCGTAAAAGCCACCGAATGGATTCTCACTCACAAACCCAATTCCACCACCGTTGTTAACCCTTCACCTTCATCACTTGCTTTCCAACCCAAACTCGACCGTTTCTTCAATGTCTCACAACAAGAACAAACAGAAGAACCAAACAAACGCATCAAGTTATCATCTTCACCAACCCCACAACCTCAAACACAACAACAAAACAAACCCTCTTTTTTCTTCAACCGTTCTAAAAAACAACAATCTCAAACCCACACTCATGAACCCTTATACGAACGTCTCCGTCCAACAACATTGGACGATGTTGTCGGACAAGATCATCTTCTATCAACAAATTCCATTCTTCGTTCTGCAATCCAACGTAACCGTCTTCCTTCTATCCTCTTGTGGGGTCCACCTGGTACAGGTAAAACCACCATTGCTAAAGCTATTATCAATTCATCAAATTCAACTTCAACTTTCTATCGTTTTGTTTCTTTATCTGCTGTTACTAGTGGTGTTAAAGATGTTAGAGATGCTGTTGATGAAGCCAGAAAACTTAGACTCAAAACAAATCAAACTACTGTTCTTTTTGTTGATGAAGTTCATAGGTTTAATAAATCTCAACAAGACTCTTTTTTACCTGTTATTGAAGATGGTAGCATTGTCTTTCTTGGTGCTACTACTGAAAACCCTTCTTTTCATTTGATTACGCCACTTTTGTCTCGTTGTCGTGTTCTTACACTTAACCCTCTTCAATCCCATCATCTTGTTTTGCTTCTTAACCGTGCTGTCACTGATATAGACAAAGGGTTGGTGCAAAGCCTCGGTTTTGGTTCCGGTTCTGGTTCTTCCCAGGTTGATGTTAGTGTTGGTGACGATGTTGTTGATTTTATAGCTAACAATTGCGATGGAGATGCTCGTGTTGCTTTGAATGTATTGGAGATTGCTGCTGTTAATGCGGCTGCTCGGGTTCAACATGATAATGAAGAATGCAAGGATGATGTTGGTGTTAATGTTAGTGTTAGGGTTGAGGATGCTAAGGAGGCACTTCAATGCAAGCATCTTGCTTATGATAAAGCTGGGGAGGAACATTATAATTTAATCAGTGCATTGCACAAGTCTATGAGGGGAAGTGATGCTGATGCAGCGATTTATTGGCTGGCAAGAATGTTAAAGGGAGGTGAAGAGCCACTTTATATTGCACGTAGGCTTGTAAGATTTGCAAGTGAGGATGTTGGTTTGGCTGATCCTTTAGCTCTTAATCAAGCTGTTTCTTGCTACCAAGCTTGTCACTTTATAGGAATGCCTGAGTGCAATGTCATTCTTGCACAATGCGTTGCTTACTTGGCTTTGGCTCCTAAATCTATAGCAGTTTATCGAGCAATTGGAGCTGCTGAGAAGTTAGTGAGGGAATCTGTTGGACAGAATGAAGGTGTGCCTCTTCATCTTAGGAACGCACCAACCAAATTAATGAAGGAAATTGGGTATGGGAAGGGATATATATACACTCCTGATAACCCTTCCTCAACACAGAGCTACTTGCCACCCTCCCTTCAAGGGTTCAAATTCCTCCATTGGCCTGACAGGAATCCCTCTGAATCTGATGGATGA 1671 0.4195 MEMQQLLSMGFPDELAAQALAATGGKSTVKATEWILTHKPNSTTVVNPSPSSLAFQPKLDRFFNVSQQEQTEEPNKRIKLSSSPTPQPQTQQQNKPSFFFNRSKKQQSQTHTHEPLYERLRPTTLDDVVGQDHLLSTNSILRSAIQRNRLPSILLWGPPGTGKTTIAKAIINSSNSTSTFYRFVSLSAVTSGVKDVRDAVDEARKLRLKTNQTTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFLGATTENPSFHLITPLLSRCRVLTLNPLQSHHLVLLLNRAVTDIDKGLVQSLGFGSGSGSSQVDVSVGDDVVDFIANNCDGDARVALNVLEIAAVNAAARVQHDNEECKDDVGVNVSVRVEDAKEALQCKHLAYDKAGEEHYNLISALHKSMRGSDADAAIYWLARMLKGGEEPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFIGMPECNVILAQCVAYLALAPKSIAVYRAIGAAEKLVRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDNPSSTQSYLPPSLQGFKFLHWPDRNPSESDG* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0416 556 Pfam AAA C-terminal domain 307 396 IPR032423 -
Tpr4g0416 556 CDD HLD_clamp_RarA 271 371 - -
Tpr4g0416 556 Gene3D - 475 554 - -
Tpr4g0416 556 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 16 553 - -
Tpr4g0416 556 Gene3D - 271 354 - -
Tpr4g0416 556 PRINTS CbxX/CfqX superfamily signature 152 167 IPR000641 GO:0005524
Tpr4g0416 556 PRINTS CbxX/CfqX superfamily signature 203 222 IPR000641 GO:0005524
Tpr4g0416 556 PRINTS CbxX/CfqX superfamily signature 325 337 IPR000641 GO:0005524
Tpr4g0416 556 SMART AAA_5 149 271 IPR003593 -
Tpr4g0416 556 SUPERFAMILY post-AAA+ oligomerization domain-like 381 550 IPR008921 GO:0003677|GO:0006260
Tpr4g0416 556 Pfam MgsA AAA+ ATPase C terminal 397 547 IPR021886 -
Tpr4g0416 556 Pfam UBA/TS-N domain 4 35 IPR015940 -
Tpr4g0416 556 Gene3D - 371 474 - -
Tpr4g0416 556 CDD AAA 129 264 - -
Tpr4g0416 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 351 IPR027417 -
Tpr4g0416 556 Gene3D - 2 51 - -
Tpr4g0416 556 Pfam ATPase family associated with various cellular activities (AAA) 153 265 IPR003959 GO:0005524|GO:0016887
Tpr4g0416 556 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 38 IPR015940 -
Tpr4g0416 556 SUPERFAMILY UBA-like 3 41 IPR009060 GO:0005515
Tpr4g0416 556 Gene3D - 102 269 IPR027417 -
Tpr4g0416 556 MobiDBLite consensus disorder prediction 67 94 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0416 115 397 Core DNA Replication Machinery Family AT1G77470 23.693 2.69e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0416 K07478 - gmx:100799257 840.106