LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr4g0416	ATGGAGATGCAACAACTTCTTAGCATGGGTTTCCCCGACGAGTTAGCCGCCCAAGCCTTAGCTGCTACCGGTGGCAAATCCACCGTAAAAGCCACCGAATGGATTCTCACTCACAAACCCAATTCCACCACCGTTGTTAACCCTTCACCTTCATCACTTGCTTTCCAACCCAAACTCGACCGTTTCTTCAATGTCTCACAACAAGAACAAACAGAAGAACCAAACAAACGCATCAAGTTATCATCTTCACCAACCCCACAACCTCAAACACAACAACAAAACAAACCCTCTTTTTTCTTCAACCGTTCTAAAAAACAACAATCTCAAACCCACACTCATGAACCCTTATACGAACGTCTCCGTCCAACAACATTGGACGATGTTGTCGGACAAGATCATCTTCTATCAACAAATTCCATTCTTCGTTCTGCAATCCAACGTAACCGTCTTCCTTCTATCCTCTTGTGGGGTCCACCTGGTACAGGTAAAACCACCATTGCTAAAGCTATTATCAATTCATCAAATTCAACTTCAACTTTCTATCGTTTTGTTTCTTTATCTGCTGTTACTAGTGGTGTTAAAGATGTTAGAGATGCTGTTGATGAAGCCAGAAAACTTAGACTCAAAACAAATCAAACTACTGTTCTTTTTGTTGATGAAGTTCATAGGTTTAATAAATCTCAACAAGACTCTTTTTTACCTGTTATTGAAGATGGTAGCATTGTCTTTCTTGGTGCTACTACTGAAAACCCTTCTTTTCATTTGATTACGCCACTTTTGTCTCGTTGTCGTGTTCTTACACTTAACCCTCTTCAATCCCATCATCTTGTTTTGCTTCTTAACCGTGCTGTCACTGATATAGACAAAGGGTTGGTGCAAAGCCTCGGTTTTGGTTCCGGTTCTGGTTCTTCCCAGGTTGATGTTAGTGTTGGTGACGATGTTGTTGATTTTATAGCTAACAATTGCGATGGAGATGCTCGTGTTGCTTTGAATGTATTGGAGATTGCTGCTGTTAATGCGGCTGCTCGGGTTCAACATGATAATGAAGAATGCAAGGATGATGTTGGTGTTAATGTTAGTGTTAGGGTTGAGGATGCTAAGGAGGCACTTCAATGCAAGCATCTTGCTTATGATAAAGCTGGGGAGGAACATTATAATTTAATCAGTGCATTGCACAAGTCTATGAGGGGAAGTGATGCTGATGCAGCGATTTATTGGCTGGCAAGAATGTTAAAGGGAGGTGAAGAGCCACTTTATATTGCACGTAGGCTTGTAAGATTTGCAAGTGAGGATGTTGGTTTGGCTGATCCTTTAGCTCTTAATCAAGCTGTTTCTTGCTACCAAGCTTGTCACTTTATAGGAATGCCTGAGTGCAATGTCATTCTTGCACAATGCGTTGCTTACTTGGCTTTGGCTCCTAAATCTATAGCAGTTTATCGAGCAATTGGAGCTGCTGAGAAGTTAGTGAGGGAATCTGTTGGACAGAATGAAGGTGTGCCTCTTCATCTTAGGAACGCACCAACCAAATTAATGAAGGAAATTGGGTATGGGAAGGGATATATATACACTCCTGATAACCCTTCCTCAACACAGAGCTACTTGCCACCCTCCCTTCAAGGGTTCAAATTCCTCCATTGGCCTGACAGGAATCCCTCTGAATCTGATGGATGA	1671	0.4195	MEMQQLLSMGFPDELAAQALAATGGKSTVKATEWILTHKPNSTTVVNPSPSSLAFQPKLDRFFNVSQQEQTEEPNKRIKLSSSPTPQPQTQQQNKPSFFFNRSKKQQSQTHTHEPLYERLRPTTLDDVVGQDHLLSTNSILRSAIQRNRLPSILLWGPPGTGKTTIAKAIINSSNSTSTFYRFVSLSAVTSGVKDVRDAVDEARKLRLKTNQTTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFLGATTENPSFHLITPLLSRCRVLTLNPLQSHHLVLLLNRAVTDIDKGLVQSLGFGSGSGSSQVDVSVGDDVVDFIANNCDGDARVALNVLEIAAVNAAARVQHDNEECKDDVGVNVSVRVEDAKEALQCKHLAYDKAGEEHYNLISALHKSMRGSDADAAIYWLARMLKGGEEPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFIGMPECNVILAQCVAYLALAPKSIAVYRAIGAAEKLVRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDNPSSTQSYLPPSLQGFKFLHWPDRNPSESDG*	557

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr4g0416	556	Pfam	AAA C-terminal domain	307	396	IPR032423	-
	Tpr4g0416	556	CDD	HLD_clamp_RarA	271	371	-	-
	Tpr4g0416	556	Gene3D	-	475	554	-	-
	Tpr4g0416	556	PANTHER	WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER	16	553	-	-
	Tpr4g0416	556	Gene3D	-	271	354	-	-
	Tpr4g0416	556	PRINTS	CbxX/CfqX superfamily signature	152	167	IPR000641	GO:0005524
	Tpr4g0416	556	PRINTS	CbxX/CfqX superfamily signature	203	222	IPR000641	GO:0005524
	Tpr4g0416	556	PRINTS	CbxX/CfqX superfamily signature	325	337	IPR000641	GO:0005524
	Tpr4g0416	556	SMART	AAA_5	149	271	IPR003593	-
	Tpr4g0416	556	SUPERFAMILY	post-AAA+ oligomerization domain-like	381	550	IPR008921	GO:0003677\|GO:0006260

Showing 1 to 10 of 21 entries

Previous1 2 3Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr4g0416	115	397	Core DNA Replication Machinery Family	AT1G77470	23.693	2.69e-11	63.5

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr4g0416	K07478		-	gmx:100799257	840.106

Showing 1 to 1 of 1 entries