Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0406 ATGGCCACCACCGCCGAACAACTTCCCTGCGACGCCGACGGCGTTTGCATGGTATGCAAAAAGAAACCCCCTCCAGAAACCGAAACACTCACCTGCAGAACATGCGTATCACTCTGGCATGTTCCTTGTTTACCACAAGTTCCAACTACTATCCTAGATTGGGAATGTCCGGATTGTTCTACACCTCTTGATGTCAACAACAACAACTCCGTCGCCGATGCTGCTCCGTCTGTTGCCGGCGATCTCATTTCTGCCATACGTGCTATAGAAAATGACGCTTCACTTACAGATGCAGAAAAAGCGAAGAAACGCCAAGAACTTGTTGGTGGATCTTCAAAAGCAAGTGATGAAGTCAAAAATAGACGTAGTGGTGTTCTGGATATTTTCGATGATAGCATTAAGTGTTCTTTCTGTATTCAGTTGCCTGAGAGACCCGTCACTAATTCATGTGGGCACAATTTTTGCCTGAAGTGTTTTGAGAAATGGATTCAACAAGGAAAACGAGATTGTGCGAAATGTAGGGCTCCAATTCCAGCAAAGATGGCGAGTAATCCGAGAATCAATGCACAGTTGGCAATTGGGATTCGTATGGCCAAACTAGCTAGATCAGAGAATGTTGGAGGGAGCACTGCTACAAAGGTTTATCATGTTGTTCACAATGATGAGCGTCCCGACACTTGTTTCAGGACGGAGAGAGCAATAAAAACTGGGAAGGCTAATGCTTGCAGTGGAAAAATCTTTGTGACAATTCCACTAGATCATTTTGGACCCATCGGTGCTGAGAATGATCCAATAAGGAACCGTGGGGTTCTTGTTGGTGAGACTTGGGAGGATAGGATGGAATGCAGGCAATGGGGAGCTCATTTTCCCCATGTTGCTGGCATTGCTGGTCAGAGTGGTCATGGTGCTCAATCTGTTGCTCTTTCTGGGGGCTATGTTGATGACGAGGATCACGGCGAGTGGTTCTTGTACACTGGAAGTGGTGGAAGGGATTTGAGTGGGAACAAACGGACAAACAAAAATCAGTCCTTTGATCAGCAATTTGAGAAAATGAATGAGGCTTTGAGAGTCAGCTGCCGAAAAGGCTATCCTGTTCGTGTCGTCAGGTCCCACAAGGAGAAACGTTCCTCTTATGCTCCGGAAGAAGGAGTGAGATATGATGGGGTTTATAGAATTGAGAAATGTTGGCGCAAAGTTGGAATGCAAGGTCATAAGGTTTGCAGGTATTTGTTTGTGAGGTGTGACAATGAGCCAGCTCCATGGACAAGTGATTTATCTGGAGACCGTCCCCGTCCACTACCTACAATCAAGGAGTTTAAGGGTGCGGTTGATATTACCGAAAGGAAGGGTGACCCTTCATGGGACTTTGATGAGGAAAAGGGCTGCTGGTTGTGGAAGAAGCCTCCACCACAGAGCAAGAAACCAATGAATGTTGTGGATCCTATAGATCCAACAAAAATACAAGTTGTTAGGCCAAAGGCAAAAAAGGTGTCCTTCAAAATCAAGGATAGGCTATTGAAAGAGTTTGGTTGCAATATCTGTCGCAAGGTGTTGGCTTCCCCACTTACTACACCTTGTGCTCATAACTTCTGCAAAGGCTGCCTGGAGGGTGCCTTTTCTGGCCAAAGTTATATCAGGAACAGGGCCACTAAAAGTGGACGCAGTTTGCGGACACAAAAGAACATTATGAAATGCCCTACTTGTTCAACTGACATAGCTGATTACCTTCAGAATCCTCAGGTTAACAGGGAAATGATGGGGGTCATAGAATTGCTCCAGCGTCAGGCTGAAGAGATGGATGAGACTGAAGAATCCAGTGCTAAAAGTGATGAGAATCTCAAGCCAGATGAGGAGACAGATGTTTCAAAACCCTCTAATTCAAATGAGAAAGTTGTGGAAGAAATTAAGGAGAATGATCTGAATCCTCCTCCACAAAAGCGGAGGAAAGGTGCCGATGGCAAGACTGTGGAGAACATGGAGGAAGCTGTTGTTCATGAGGCAGAAGTGGAAAGCAAAACAGTGACTTGCAATTAG 2034 0.4558 MATTAEQLPCDADGVCMVCKKKPPPETETLTCRTCVSLWHVPCLPQVPTTILDWECPDCSTPLDVNNNNSVADAAPSVAGDLISAIRAIENDASLTDAEKAKKRQELVGGSSKASDEVKNRRSGVLDIFDDSIKCSFCIQLPERPVTNSCGHNFCLKCFEKWIQQGKRDCAKCRAPIPAKMASNPRINAQLAIGIRMAKLARSENVGGSTATKVYHVVHNDERPDTCFRTERAIKTGKANACSGKIFVTIPLDHFGPIGAENDPIRNRGVLVGETWEDRMECRQWGAHFPHVAGIAGQSGHGAQSVALSGGYVDDEDHGEWFLYTGSGGRDLSGNKRTNKNQSFDQQFEKMNEALRVSCRKGYPVRVVRSHKEKRSSYAPEEGVRYDGVYRIEKCWRKVGMQGHKVCRYLFVRCDNEPAPWTSDLSGDRPRPLPTIKEFKGAVDITERKGDPSWDFDEEKGCWLWKKPPPQSKKPMNVVDPIDPTKIQVVRPKAKKVSFKIKDRLLKEFGCNICRKVLASPLTTPCAHNFCKGCLEGAFSGQSYIRNRATKSGRSLRTQKNIMKCPTCSTDIADYLQNPQVNREMMGVIELLQRQAEEMDETEESSAKSDENLKPDEETDVSKPSNSNEKVVEEIKENDLNPPPQKRRKGADGKTVENMEEAVVHEAEVESKTVTCN* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0406 677 ProSiteProfiles Zinc finger RING-type profile. 135 174 IPR001841 -
Tpr4g0406 677 SUPERFAMILY RING/U-box 503 594 - -
Tpr4g0406 677 SUPERFAMILY RING/U-box 126 181 - -
Tpr4g0406 677 ProSitePatterns Zinc finger RING-type signature. 526 535 IPR017907 -
Tpr4g0406 677 Gene3D - 249 429 IPR036987 -
Tpr4g0406 677 SMART PHD_3 15 60 IPR001965 -
Tpr4g0406 677 MobiDBLite consensus disorder prediction 596 668 - -
Tpr4g0406 677 SMART G9a_1 260 417 IPR003105 -
Tpr4g0406 677 ProSiteProfiles Zinc finger RING-type profile. 511 569 IPR001841 -
Tpr4g0406 677 SMART ring_2 16 59 IPR001841 -
Tpr4g0406 677 SMART ring_2 511 568 IPR001841 -
Tpr4g0406 677 SMART ring_2 135 173 IPR001841 -
Tpr4g0406 677 Pfam RING-type zinc-finger 511 552 IPR027370 -
Tpr4g0406 677 Pfam SAD/SRA domain 268 416 IPR003105 -
Tpr4g0406 677 MobiDBLite consensus disorder prediction 596 677 - -
Tpr4g0406 677 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 198 IPR013083 -
Tpr4g0406 677 Coils Coil 592 612 - -
Tpr4g0406 677 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 78 IPR013083 -
Tpr4g0406 677 SUPERFAMILY FYVE/PHD zinc finger 6 61 IPR011011 -
Tpr4g0406 677 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 663 IPR045134 -
Tpr4g0406 677 SUPERFAMILY PUA domain-like 239 435 IPR015947 -
Tpr4g0406 677 CDD RING-HC 135 173 - -
Tpr4g0406 677 ProSitePatterns Zinc finger PHD-type signature. 16 59 IPR019786 -
Tpr4g0406 677 ProSiteProfiles YDG domain profile. 265 413 IPR003105 -
Tpr4g0406 677 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 498 624 IPR013083 -
Tpr4g0406 677 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 3 663 - -
Tpr4g0406 677 Pfam Zinc finger, C3HC4 type (RING finger) 135 173 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0406 Tpr-Chr4 3913895 3918192 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0406 7 602 C2H2 Transcription Factor Family AT5G39550 61.296 0.0 737
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0406 K10638 - gmx:100786796 950.658