Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0379 ATGAAGTGTTTCTTTTGCTTGTGTGTAGATAAAATGCAATCAGATAATGGCAAGTTATTTATTGGTGGAATATCGTGGGACACAAATGAAGAACGACTCAGGGAGTATTTTAGTACTTATGGTGAGGTTAAGGAAGCAGTGATAATGAAGGATCGGACATCTGGTAGAGCTCGTGGATTTGGTTTTGTTGTTTTCATCGACCCAGCTGTTGCAGAAATTGTCATCAAAGAGAAGCACAACATCGATGGAAGGATGGTTGAGGCGAAGAAAGCCGTTCCTCGTGATGATCAGAATGTATTGAGTAGAACCAGTGGCAGCATCCAAGGTTCTCCTGGTCCAGGTCGCACAAGAAAGATATTTGTTGGAGGTTTAGCTTCTACAGTGACAGAGAGTGATTTCAAGAAGTACTTTGATCAGTTTGGGACTATAACAGATGTTGTAGTAATGTATGATCACAACACTCAGAGGCCACGGGGCTTTGGATTTATCACTTATGATTCAGAAGAGGCTGTTGACCAGGTCTTACTTAAGACGTTTCATGAATTGAACGGTAAAATGGTTGAGGTCAAGCGAGCAGTTCCTAAGGAGTTATCGCCAGGACCTACCCGCTCTCCTCTCAGCGGATACAACTATGGTCTGAGTAGGGTCAATAGTTTCTTGAATGGTTTCAGTCAGGGGTACAGTCCAAGTACTGTTGGAGGCTATGGACTTCGGATGGATGGTAGGTTCAGTCCGGTTGCTAGTGGCCGAAATGCATTTGCGCCATTTGGTTCTGCTTATGGAATGGGTATGAATTTCGAGCCTGGTTTGAGTCCTGGATTTGGAGGTAATGCAAATTTCAATGGAAATCTTAGCTATGGACGGGGCTTAAATCCGTACTTCATCGGCAGCTCCAATAGGTTTGGCAGTCCTGTTGGATATGAAAGTGGTAATGGAGGAAACAATTCGTTCTTCAGTTCTGTGACTCGAAATTTGTGGGGGAATGGAAGCCTTAACTATGGAACAAATTCTGCAAATTCCAGTGCATACATTGGATCAGGGAGTGGGAATGTTGGAGGAAATGCATTCGGCAATACTGGAGTTAACTGGAGTTCTTCCCCGATTTCTGGACACGGTGGAGGGAACAATGTGTCACAGGGTAGTGGCAACCTTGGATATGGAGGTGGCAACAACGGTTATGGATTAGGGACTGAAGGGTATGGAAGAAGCAGTGGCTCCACTCTTGCACCAACATCTTCATACTCTGCATCAAATGGTGGTGGTGTTGATGGTGCTTTTGCTGATTTTTACAACAATAATTCGGTCTATGGGGACACCACTTGGCGATCTTCGAATTCTGAGAGAGATGGATCTGGCCCCTTTGGTTACGGACTTGGTGGTGCAGCTTCAGATGTTTCTGCCAAGACTTCTCCTGGTTATGTTGGTGGTTATACTGTTAATAAAAGGCAGCCAAATAGGGGAATTACTACATAG 1473 0.4447 MKCFFCLCVDKMQSDNGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTSGRARGFGFVVFIDPAVAEIVIKEKHNIDGRMVEAKKAVPRDDQNVLSRTSGSIQGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMVEVKRAVPKELSPGPTRSPLSGYNYGLSRVNSFLNGFSQGYSPSTVGGYGLRMDGRFSPVASGRNAFAPFGSAYGMGMNFEPGLSPGFGGNANFNGNLSYGRGLNPYFIGSSNRFGSPVGYESGNGGNNSFFSSVTRNLWGNGSLNYGTNSANSSAYIGSGSGNVGGNAFGNTGVNWSSSPISGHGGGNNVSQGSGNLGYGGGNNGYGLGTEGYGRSSGSTLAPTSSYSASNGGGVDGAFADFYNNNSVYGDTTWRSSNSERDGSGPFGYGLGGAASDVSAKTSPGYVGGYTVNKRQPNRGITT* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0379 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 93 IPR000504 GO:0003723
Tpr4g0379 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 80 IPR000504 GO:0003723
Tpr4g0379 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 176 IPR000504 GO:0003723
Tpr4g0379 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 194 IPR000504 GO:0003723
Tpr4g0379 490 Gene3D - 15 99 IPR012677 -
Tpr4g0379 490 Gene3D - 114 200 IPR012677 -
Tpr4g0379 490 CDD RRM2_DAZAP1 115 194 IPR034131 GO:0003723
Tpr4g0379 490 SUPERFAMILY RNA-binding domain, RBD 116 204 IPR035979 GO:0003676
Tpr4g0379 490 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 12 489 - -
Tpr4g0379 490 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 12 489 - -
Tpr4g0379 490 SUPERFAMILY RNA-binding domain, RBD 11 116 IPR035979 GO:0003676
Tpr4g0379 490 CDD RRM1_hnRNPA_hnRNPD_like 19 89 - -
Tpr4g0379 490 SMART rrm1_1 18 89 IPR000504 GO:0003723
Tpr4g0379 490 SMART rrm1_1 118 190 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0379 Tpr-Chr4 3700868 3705603 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0379 5 292 Eukaryotic Initiation Factors Gene Family AT1G71770 27.327 1.38e-16 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0379 K14411 - gmx:100795907 832.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g0379 4 3700868 3705603 Tpr4g0379 4 3700868 3705603 ECH