Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0371 ATGCTCCCTCCGCGACAACAGTCCCGGGTTGGAGGTCTCCAAACATCACTGTCTCTGGTTTCTTCGGATCCTCGCTTGTCTCCAGAGGATCCTAGGTCAAACTCTGATAACATCCGGGAATCTCCTACTGAAAGTGCTAGCTCTAGAGAAACCTGGCCTACTGCTGATGCAATTGCTGCAAAGAAGATGGAGAATGGAAAAGCTGATATTGATTGTCCTGATCAGTCAGTTATTCGTCGTGTTTCTAGTGCGGATAGAATTAGTCTTCAGGATATTGCTAGAGAAAGAGTGGATGTGATATGTGACAAAATGCACCATCTACCTGAAGAGTTTCTGGATGAGCTGAAAAATGGGCTTCGAGTTATACTTGAAGGAGGAAATGGCTCACAGCATAGAGACGAGTTTTTCATTTTGCAGAAGCTTGTTCAGAGTAGATCTGATTTAACAGCCAAGACATTGATTCGAGCACATCGAACACAGCTTGAAATCCTTGTTTCCATAAATACTGGAATTCAGGGATTTTTACATCCTAGCCTCGGTCTGTCGCAGACAATGCTGATTGAGGTATTTCTGTACAAGAGATGCAGAAACATAGCTTGCCGAAACCTGCTTCCAGCTGATGATTGTTCTTGTGAAACATGCACTGACAACAATGGCTTCTGCAATCTTTGCATGTGTGTTATCTGCAGCAAGTTTGACTTTGAAGTAAATACTTGCCGTTGGATTGGATGTGATTTGTGTTCTCATTGGACTCACACAGATTGTGCCATTCGGGCGAAGCTTATCTGCATGGGTCCTTCTGTAAAGAGTGGATCAGGGCCAAGCGAAATGGTTTTCAGGTGTCAAGCATGCAATAGGACTTCAGAACTGTTGGGCTGGGTTAAAGACGTATTCCAGCACTGTGCACCATCATGGGATGCGGAGGCCTTGATGAGGGAGCTTGATTTTGTTAGTAGGATCTTTCATGGTAGTAAAGACCAACGGGGGATGAAACTCTATTGGAAGTGTGATGATCTCAAGGAAAAACTGAAAAGCCGAAAAATGGAATCTAAAGCAGCATGCAGAGCAATATTGTTGGTTTTCCAAGAGCTCGACCTGGATTCCCCAAAGAGCCTGGAAAATGCAGAAAGTGGAAGGCTGATTGCTCCACAGGAGGCATGCAATAGAATTGCTGAAGTGGTGCAAGAGGCTATACGAAAGATGGAATTTGTAGCTGATGAGAAGAAGAGAATGCACAAGAAGGCTCGCTTAGCTGTTGAGGCTTGTGATCGTGAATTAGCAGACAAGGCCAGAGAAGCAGGAGAACTCAAGATGGAGAGGCAAAAAAAGAAGTCACAGATTGAAGAACTAGAGAGAATTGTGAGGCTTAAAAATGCAGAGGCTGATATGTTCCAGTTGAAGGCTAATGAGGCCAAACGAGAGGCTGAAAGGCTCCAGAGGATTGCTCTTGCCAAGTCTGATAAATCAGAGGAAGAATATACCAGCAACTATTTGAAACAGAAGTTAAGTGAAGCTGAGGCCGAGAAGCAATATCTCTATGAGAAAATCAAAATGCAGGAGAGTTCTCGTTTATCACAGAGCAGTGGTGACCCCTCTTCAATGCTGATGTATTCCAAAATCCATGATCTTCTATACAGTGGCCCTCCCAAGGCAGACAGTCAATCTAACGACTGCCACCCTTTCCGCACAAACCCATGA 1698 0.4441 MLPPRQQSRVGGLQTSLSLVSSDPRLSPEDPRSNSDNIRESPTESASSRETWPTADAIAAKKMENGKADIDCPDQSVIRRVSSADRISLQDIARERVDVICDKMHHLPEEFLDELKNGLRVILEGGNGSQHRDEFFILQKLVQSRSDLTAKTLIRAHRTQLEILVSINTGIQGFLHPSLGLSQTMLIEVFLYKRCRNIACRNLLPADDCSCETCTDNNGFCNLCMCVICSKFDFEVNTCRWIGCDLCSHWTHTDCAIRAKLICMGPSVKSGSGPSEMVFRCQACNRTSELLGWVKDVFQHCAPSWDAEALMRELDFVSRIFHGSKDQRGMKLYWKCDDLKEKLKSRKMESKAACRAILLVFQELDLDSPKSLENAESGRLIAPQEACNRIAEVVQEAIRKMEFVADEKKRMHKKARLAVEACDRELADKAREAGELKMERQKKKSQIEELERIVRLKNAEADMFQLKANEAKREAERLQRIALAKSDKSEEEYTSNYLKQKLSEAEAEKQYLYEKIKMQESSRLSQSSGDPSSMLMYSKIHDLLYSGPPKADSQSNDCHPFRTNP* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0371 565 MobiDBLite consensus disorder prediction 545 565 - -
Tpr4g0371 565 Pfam Coiled-coil region of Oberon 413 544 IPR032535 -
Tpr4g0371 565 PANTHER PROTEIN OBERON 2 1 556 - -
Tpr4g0371 565 MobiDBLite consensus disorder prediction 1 52 - -
Tpr4g0371 565 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 103 125 IPR004082 -
Tpr4g0371 565 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 145 160 IPR004082 -
Tpr4g0371 565 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 160 175 IPR004082 -
Tpr4g0371 565 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 186 207 IPR004082 -
Tpr4g0371 565 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 232 252 IPR004082 -
Tpr4g0371 565 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 305 324 IPR004082 -
Tpr4g0371 565 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 448 468 IPR004082 -
Tpr4g0371 565 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 487 509 IPR004082 -
Tpr4g0371 565 MobiDBLite consensus disorder prediction 1 23 - -
Tpr4g0371 565 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 556 IPR004082 -
Tpr4g0371 565 SMART PHD_3 225 285 IPR001965 -
Tpr4g0371 565 MobiDBLite consensus disorder prediction 549 565 - -
Tpr4g0371 565 Pfam PHD - plant homeodomain finger protein 195 318 IPR032881 -
Tpr4g0371 565 PIRSF UCP025218 1 548 IPR004082 -
Tpr4g0371 565 Coils Coil 433 488 - -
Tpr4g0371 565 MobiDBLite consensus disorder prediction 38 52 - -
Tpr4g0371 565 CDD PHD_OBE1_like 225 284 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0371 195 330 PHD Gene Family AT5G57380 25.735 5.33e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0371 - - gmx:100795450 1038.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g0371 4 3642337 3645746 Tpr4g0371 4 3642337 3645746 ECH