Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0348 ATGTCTTCTTCTTCATCTTCTTCTTCTTCCTCTTCTTCTCCATTATCATCACTTCAACAACCATCTTCATCAATAACTCCTTCAAATGTTGTTGATATTCCTGGCCCTAGTAACACTAACAATGATGATGAATTTGAAGCCCCTTCTTCTTCAAGACAACGTGCTATGAATGAAGTTTGGCTTGAACCTGTTGTTGAAGCATTGGCTACTCAAGTTGCCATTGATGCTTCTCATTATCATGGTCGTCTTTCTGCTGCTTCAGCTCTTGCTATTATTTTTCAGGTTTGTTCTACATGGAGAGAAGTGTCACGCTCGGATCTACTGTGGCAGAGACTCACAAGACGCATCTGGCGCAGAACATATAGATTGAGGGACACGTGGCAACTTGAGTACATCTACTGGCATCGAACGGCCAGGAACTTCACAACAGGTAGACACGCTTTAGTGGTCCCACAATATGATCCAGGAGACCACCACCAAGCTCTCATTTGCCGCTGCCTCACTCTCTCCGACACCCACCTTGCCTGTGGCTTCGTCGACGGTACTGTTCGACTCTTCAATCTCAACACCGGTGCACACATCACTACTTTTTGGTCCAATCACGGTCACTTATTCGGCCCATTTTCACAATCTATTTCCGGAATTGTAATTACAAACTCTAGTCTCGTTTTTGCAAGACTAGATGGTGATATTTACATGTCATTGATCAATGGGCCCAGACCTATACCCGGGCCCATTCCAGCACGAAGAGCAATTATTGGTGATGTAGTTAATAACGGAGTATTAGTAGAATTTGCGGGATGTAACCGATTTTGGATTGGTTTATTCGCGGGCCATGCAGGCGGAGCATTTCAAATATGGGACGCCCAAACGGAACAACGTATATTCGTTGGTGGTTCATTAACCGACCCGGAATCAGTTCAAGGATGGCATATGTTAACAGAATTAGTTGAACCAGTCGGTCGAGTCAGAGTAACAGAAAGAGAATTTGTAGTAGCATGTACAACATCAAGATTGGTTTGTTTCAACTTAAGAAATCCAGAGATTCTATTACGTGACATGGGATCCACAACAGGTTTCATGGTAAGTTCATTAGACATTAGCCATGAAGTTTTTGTTGTGGTTGAAAGAAATGGTGTTGGAACGGTTAGGCGCGTGGGAAATTTTGAGCGCGTGAGTAGGTTTCGGTTAAGAGGTTCATGGTTAAGGGGTTTATTAGTGTGCATGAATTTAGGGTATGTTATAACATATTCAAGTGGGTCTGGTTTGTTGAGAGTATGGGACATACATGAACCTACGGCAAGGTTGTGTATTACAATTGCGGTTAGAGATGATGGTGGAGAACAAGGACATGTTCATGGTAATAGTATGGTCGCTAATCAAACTCATGTTGCAATTTCATCTAATGATTCTTCCATACATTTATTGGATTTTAGTGTACAGTAG 1446 0.4253 MSSSSSSSSSSSSPLSSLQQPSSSITPSNVVDIPGPSNTNNDDEFEAPSSSRQRAMNEVWLEPVVEALATQVAIDASHYHGRLSAASALAIIFQVCSTWREVSRSDLLWQRLTRRIWRRTYRLRDTWQLEYIYWHRTARNFTTGRHALVVPQYDPGDHHQALICRCLTLSDTHLACGFVDGTVRLFNLNTGAHITTFWSNHGHLFGPFSQSISGIVITNSSLVFARLDGDIYMSLINGPRPIPGPIPARRAIIGDVVNNGVLVEFAGCNRFWIGLFAGHAGGAFQIWDAQTEQRIFVGGSLTDPESVQGWHMLTELVEPVGRVRVTEREFVVACTTSRLVCFNLRNPEILLRDMGSTTGFMVSSLDISHEVFVVVERNGVGTVRRVGNFERVSRFRLRGSWLRGLLVCMNLGYVITYSSGSGLLRVWDIHEPTARLCITIAVRDDGGEQGHVHGNSMVANQTHVAISSNDSSIHLLDFSVQ* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0348 481 MobiDBLite consensus disorder prediction 1 49 - -
Tpr4g0348 481 SUPERFAMILY F-box domain 82 141 IPR036047 GO:0005515
Tpr4g0348 481 PANTHER TRANSCRIPTIONAL REGULATOR STERILE APETALA 1 480 - -
Tpr4g0348 481 PANTHER WD40 REPEAT PROTEIN 12, 37 1 480 - -
Tpr4g0348 481 Gene3D - 264 481 IPR015943 GO:0005515
Tpr4g0348 481 Gene3D - 126 256 IPR015943 GO:0005515
Tpr4g0348 481 SUPERFAMILY WD40 repeat-like 163 477 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0348 Tpr-Chr4 3441763 3448973 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SAP Tpr4g0348 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0348 - - gmx:100781108 620.928