Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0347 ATGGCATCCAAATCCTCTAGCATCTCTGCCACTTCACAAGATCAAGGTGATTCTTCCAACTCAAAAAAAGTGGCGATCATGAAGGAAATCAGACAAGATCAACCCTCAAACTCCAATTCCAACAAGCCCATCGATGTCGTGAAACTATCGAAAGAGGATTCGGTTGCCGGATCAAAGGTGCAAGAGCGAGATTTTATTGGCGGTCCTATTCAAGTTGGTTCATCATCTGGTTTTCCAAGTAACAACAACGGAGAGAAACATAAGAACAACGGTAAAAAGGATAATTCAAATTCCAGGTCTTTTTCATGCTCCTTTTGTAAGAGACAATTTCCTACTTCACAAGCATTAGGAGGACACCAGAATGCTCATAAGGCAGAACGCACTTTAGAAAAACAACGGAAACAAAGATATAATAGTGGTGCTTTAGGTTTAGGGCAACCTCACTTTAGCCCTTATTATAGTTATCCAAGTACTTATTTTACATCTCCTTATTATAGGGCACTTGGGACTAGAATGGAGTCCTTGATTCAAAAACCATCTTATTTTAAACCTAGGATTGACCCCCCATATAGGCTTGGGTATGGTCATGGTGCTATATGTTTGCAAGAGACATTAAATTCTTCTCTCGTGTCATTAAGAAATATGAGAGGTGGTAATAGCGGAGTTGGAAATCTAGATATTGATGGTACATCTACTTTAAGGATCGAAGATGGTACAAATAATAAAATTGGTGCTATTCTAAAATTTGAAGATTCTTTTACAAATATTGCTACAAGTTCAAACTTAGACATAGGGAAAAAATTTGTTGTGGCTCCTACTCCTATCAAGGATGATATTCATCGATCAAAGTCCAACATTGAAGAAGAAATCTCCAACTCTGACAAATCTTTCGGGCTTGATTTGTCACTTAAGCTTTAA 918 0.378 MASKSSSISATSQDQGDSSNSKKVAIMKEIRQDQPSNSNSNKPIDVVKLSKEDSVAGSKVQERDFIGGPIQVGSSSGFPSNNNGEKHKNNGKKDNSNSRSFSCSFCKRQFPTSQALGGHQNAHKAERTLEKQRKQRYNSGALGLGQPHFSPYYSYPSTYFTSPYYRALGTRMESLIQKPSYFKPRIDPPYRLGYGHGAICLQETLNSSLVSLRNMRGGNSGVGNLDIDGTSTLRIEDGTNNKIGAILKFEDSFTNIATSSNLDIGKKFVVAPTPIKDDIHRSKSNIEEEISNSDKSFGLDLSLKL* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0347 305 PANTHER ZINC FINGER PROTEIN KNUCKLES 77 305 - -
Tpr4g0347 305 Gene3D Classic Zinc Finger 79 142 - -
Tpr4g0347 305 MobiDBLite consensus disorder prediction 31 45 - -
Tpr4g0347 305 PANTHER ZINC FINGER PROTEIN JAGGED 77 305 IPR045320 GO:0003700
Tpr4g0347 305 MobiDBLite consensus disorder prediction 1 22 - -
Tpr4g0347 305 MobiDBLite consensus disorder prediction 1 97 - -
Tpr4g0347 305 Pfam C2H2-type zinc finger 101 125 - -
Tpr4g0347 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
Tpr4g0347 305 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Tpr4g0347 305 SUPERFAMILY beta-beta-alpha zinc fingers 98 129 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0347 Tpr-Chr4 3435082 3435999 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0347 93 156 C2H2 Transcription Factor Family AT5G01860 48.438 1.82e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0347 - - mtr:MTR_3g011970 316.235