Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0327 ATGAATTCTAGGTGTTTGTTGAATTCCAACAGCATAGTTCAATCTTCTTCAAGTTATGCAGAAAGAGCAGATAGAGATGGTAGTTCTAGAAATAGACCTCAACTTGTCTCGTCACCGCCTTCGTTTTCGGTTAGGATGGCGATGAGAATATCTAGATCAAGATGGTTTACCTTGTTAAGAAGAGTTTTTCATTACCAAAATGGATCAAGGTCTAATCTTGGCTCTAATCCTTTCAATTCGAGTACTTGGTTGATGTTGGAGTTTATTGTTTTGTTCGTACAAATAATCATTTCTACATTCATTTTGGCTATTTCAATGAGGGAGAAACCTGTTTGGCCTATGAGGGTATGGATATCTGGTTATGATATTGGATGTGTTCTTAATCTGCTTATGGTTTATGGCCGGTATCGACAAATTTATCTTATTCAAGGAGATACTCTTAGTCTTTCTGATATGGAACAGCAGAGAAACAATGAAGAAACAAGGATGCCACACTTGATGAACAAATGCAGGACATCACTGGAGTTTTTCTTTGCCATATGGTTTGTGATGGGAAATGTTTGGTTTTTCGACTCACGTTTTGGTTCATTTCAACAAGCTCCAAAACTTCATGTCCTCTGCATCACATTGCTTACTTGGAATGCAATCTGCTACTCTTTCCCTTTCCTACTTTTTCTTCTGTTATGCTGTTGTGTACCACTGATCAGCACCCTCCTTGGTTACAACATGAACATGGCCTCTTCTAATAAAGGTGCGACTGATGAACAAATTTCGCAACTTCCAAGTTGGATACATAAAGAACCTCATACCAAGTTAGAGCCTGCCGATGACTCTGAAAGCATTGAAAATTTTATCAATGAAGATCCGGAATGTTGCATTTGCTTAGCAAAATACAAAGACAAAGAAGAACTTAGGCAATTGCCATGTTCTCATGTGTTCCACCTAAAATGTGTGGACCAGTGGCTGAAAATTTTATCTTGCTGTCCACTCTGCAAACAAGGTTTAGAGAGGTAG 1014 0.3846 MNSRCLLNSNSIVQSSSSYAERADRDGSSRNRPQLVSSPPSFSVRMAMRISRSRWFTLLRRVFHYQNGSRSNLGSNPFNSSTWLMLEFIVLFVQIIISTFILAISMREKPVWPMRVWISGYDIGCVLNLLMVYGRYRQIYLIQGDTLSLSDMEQQRNNEETRMPHLMNKCRTSLEFFFAIWFVMGNVWFFDSRFGSFQQAPKLHVLCITLLTWNAICYSFPFLLFLLLCCCVPLISTLLGYNMNMASSNKGATDEQISQLPSWIHKEPHTKLEPADDSESIENFINEDPECCICLAKYKDKEELRQLPCSHVFHLKCVDQWLKILSCCPLCKQGLER* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0327 337 ProSiteProfiles Zinc finger RING-type profile. 291 332 IPR001841 -
Tpr4g0327 337 SMART ring_2 291 331 IPR001841 -
Tpr4g0327 337 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 18 336 - -
Tpr4g0327 337 MobiDBLite consensus disorder prediction 17 36 - -
Tpr4g0327 337 SUPERFAMILY RING/U-box 283 335 - -
Tpr4g0327 337 Pfam RING-like zinc finger 290 318 IPR001841 -
Tpr4g0327 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 336 IPR013083 -
Tpr4g0327 337 Coils Coil 149 169 - -
Tpr4g0327 337 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 18 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0327 Tpr-Chr4 3229954 3232972 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0327 10 335 C3H Transcription Factor Family AT4G26580 62.805 2.29e-138 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0327 - - gmx:100813670 549.666