Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0310 ATGTTGTGTTATATATTGACAGATTTCAAAATGGAGAGCTACAGAGATGTTGATGTTCATTCGACTGAAACTGATTCATCTGATGCATCTTCAGAAACTGATGCCGAACATAATAGTAGTGAAAATAGTGAGGATGGAGATGGTTATGTTGTATCGTCTGCAGATCAAAGTTCAGATGATGAAGATGTTGCTCATAATGACGATGATGAGGATGCGTTTGAAGCAACTACAGGTGATAAATTCTTAAGGGTTGATTCCATGACTGTTGAGGAAATTCGTGCTCTGGAATTTGTAAATGTGGCTGAAGCTTATGAATTTTATTATCAATATGGAAAATGTAAAGGTTTTGCCATTCGGAAACGCGATGTTAGGCGTAGAGGGCCCAAAGGTAGTGAAATCATAGTAATGAACGAGTTCGTATGCAACAAGCATGGCTCAAGAAACAAGAAGCACTTGATTAGGGTGGATAGGAAAAGAGAACACCGTCGTCTGACTCGTACTCAATGCGGAGCTAGGCTCCGTGTGCTCTACAAAAAAAATAAAGACAAATATGTAGTGTCATTATTTGAAGAGACTCATAACCATGAATTAACTCCAGCTAAATATGTGCATTTACACCCTGTTTATCGTAACCTTTCTGAATCAGATAGAGCTCAAGTTGATGGTCTTCAGTCACATGGGATCAGAACTTGTCATATAATGGGATACATGGTTGCTCAAAAGGGTGGATATACTGGTGTTGGTTTTACAAAGAAAGATTTGTACAATTATTTCGACAAAAAAATGCGTAGTGCTGTTAAAGATGGTGATGTTTCTGCTGCTTTAAATTATCTTAATGTGAAATCATCTACTGATCCCATGCTATATGCAGAGTATTCTGTCGATGGAAACGGGCGTATGAAAACACTTTTTTGGGCAGACGGCACAAGTAGATCTGATTATTTCTGTTTTGGTGATGTGGTTGCGTTTGACACAACATATGGGAAGAACAAATACAATTATCCACTGGTTATTTTTTCTGGGTGCAACCACCACTTACAATCTGTCATATTTGCTTCTGCATTGGTGTCGGATGAAACGACTGAGACGTATAAGTGGTTGCTCAACACTTTTTTAGAGTGCATGAATAATCAATATCCAACAGGAGTTGTCACAGACGGGGATGGGGCCATGAGGGAGGCTATAAAGCAGATTTTTCCTGATTCAACCCATAGGTTGTGTGCTTGGCATTTGAACAAAAATGCAGGTGAAAATGTAAAGAATGTTGGTTTTTTGCGTGGATTTCAAAAAGCAATGTACTCAAATTTTACAGTTGAAGAATTTGAAGAATTTTGGTCAGAGCTATTGAAGGAGACTGAACTTGAATCACATCCTTGGGTTGTCAAAACATATGAGAACAGGTCACTTTGGGCAACTGCATATCTACGTGAAAAGTTCTTTGGTCGTATAAGAACTACGTCTCAATGTGAAGCAATCAATGCAATCATCAAGAATTATGTAAGGAAGAAAGGGTGCATTTATGAATTTATGCACAATTTTGAACAGGCATTGGTAGGGTACAGAAACAATGAACTTGTTGCTGATTTTAACTCCAAGTTTACAGATCCTGTGTTGTCAAGTCATCTGCATTTGCTTGAGAGCCATGCTGCTAAAACTTACACCGCAGCGGTTTTTAAGGAAGTAAAAGAACAAATTATGAAGGTTGCTGCATTAATTGTGAAGGAACGGTTTACAATGGGGGATACCTTGATTTTTATATTGAAAAAATATTGTCAGACTGGTTTTGAACGACAAGTTGCATATGATATTTCAACTCAATCATTTCAGTGTTCATGTAGATTGTTCGAGTCTCGCGGACTTCCATGTTCTCACATGTTTTATGTCTTGAAGGAAGAGAGTATTGATCACATACCTGCTAGTTTGATTTTGAACCGTTGGACTAAGGATGCCAAAGTTGGGTTCTTGAACATGAATTCTACTGGGGACTTAGATTCCAAGATGATGGAACAAGCTCGTTTTGGTGCTTATTGTTCTGCTTTTACTACTTTTTGCAAAGAAGCTTCAAAAAGGAATGGTGTTTTTGGGGATGTAATGGGTGAAATAATGAAACTACATCACAAGTATTGTGAAGCTGAGGACCCTATTGTTCCTACCGAAAAGACATATGTAGGTGATCCAATGAATGTGAAGAGCAAAGGAGCTCCAAAGAAGAAAAAAAATGCCCCAAAAACAACCAGACACTGTGGATACTGCCAAAGTACCATTCATGATGCTAGGAATTGTCCGGAAAGACTGGATTCGACTGATGAAGAAGATTTTGCGGTTGACTCGGTTTCGGGAAATGATTCTTTAAGCAAAATACAAAAGAGATGCAAAAAGAAAGCCAGAGGTGATTATGGTAGTAGGGCAAAAAAGAAATGTTCGCAGACACCACAAAGTGAAACTGGTCAAAGTGGTAACGTTGCAAAAACGCGGAGTAGCCGGCAAAAGAAATGTTCACAGAAACCCCAAAGTGAAACTTTTCAAAGTGTTAACGTTACAACAACGAGGCGTCCGGATATTAGAACCAGACAAGTGTCTCAAATGTTTCGTGGTCAACCTATGACGCCTGTGGGAGAGCCTGTGATTCACCCAATGCCTATCGTACAACCCATGTACCCAATGTATGGAATGCCAACTGGGGAAAATTCAAACCATTGTTTCGGTGTCTTGCAACAAGTGATGAAATTTGGTGGTCAAAATTGA 2745 0.3894 MLCYILTDFKMESYRDVDVHSTETDSSDASSETDAEHNSSENSEDGDGYVVSSADQSSDDEDVAHNDDDEDAFEATTGDKFLRVDSMTVEEIRALEFVNVAEAYEFYYQYGKCKGFAIRKRDVRRRGPKGSEIIVMNEFVCNKHGSRNKKHLIRVDRKREHRRLTRTQCGARLRVLYKKNKDKYVVSLFEETHNHELTPAKYVHLHPVYRNLSESDRAQVDGLQSHGIRTCHIMGYMVAQKGGYTGVGFTKKDLYNYFDKKMRSAVKDGDVSAALNYLNVKSSTDPMLYAEYSVDGNGRMKTLFWADGTSRSDYFCFGDVVAFDTTYGKNKYNYPLVIFSGCNHHLQSVIFASALVSDETTETYKWLLNTFLECMNNQYPTGVVTDGDGAMREAIKQIFPDSTHRLCAWHLNKNAGENVKNVGFLRGFQKAMYSNFTVEEFEEFWSELLKETELESHPWVVKTYENRSLWATAYLREKFFGRIRTTSQCEAINAIIKNYVRKKGCIYEFMHNFEQALVGYRNNELVADFNSKFTDPVLSSHLHLLESHAAKTYTAAVFKEVKEQIMKVAALIVKERFTMGDTLIFILKKYCQTGFERQVAYDISTQSFQCSCRLFESRGLPCSHMFYVLKEESIDHIPASLILNRWTKDAKVGFLNMNSTGDLDSKMMEQARFGAYCSAFTTFCKEASKRNGVFGDVMGEIMKLHHKYCEAEDPIVPTEKTYVGDPMNVKSKGAPKKKKNAPKTTRHCGYCQSTIHDARNCPERLDSTDEEDFAVDSVSGNDSLSKIQKRCKKKARGDYGSRAKKKCSQTPQSETGQSGNVAKTRSSRQKKCSQKPQSETFQSVNVTTTRRPDIRTRQVSQMFRGQPMTPVGEPVIHPMPIVQPMYPMYGMPTGENSNHCFGVLQQVMKFGGQN* 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0310 914 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 60 688 IPR031052 GO:0006355
Tpr4g0310 914 SMART 26again6 608 635 IPR006564 GO:0008270
Tpr4g0310 914 MobiDBLite consensus disorder prediction 805 856 - -
Tpr4g0310 914 MobiDBLite consensus disorder prediction 784 856 - -
Tpr4g0310 914 MobiDBLite consensus disorder prediction 17 43 - -
Tpr4g0310 914 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 60 688 - -
Tpr4g0310 914 MobiDBLite consensus disorder prediction 17 70 - -
Tpr4g0310 914 ProSiteProfiles Zinc finger SWIM-type profile. 595 633 IPR007527 GO:0008270
Tpr4g0310 914 Pfam FAR1 DNA-binding domain 105 198 IPR004330 -
Tpr4g0310 914 Pfam MULE transposase domain 320 414 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0310 Tpr-Chr4 3107160 3111070 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr4g0310 MULE 6.5e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0310 - - ccaj:109792835 856.284