Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0300 ATGTCACAAGCAAGCATGTCCTCAGAATCAGATGGTGGCAACATAGAACTTGGTGCTAGTTTACTACTTGCTACTACTACTACTACTAGCAGCAACAAATACAATAAGATATGGCATAGAAGCAAGATACTACTATACATAAAAGTCATTATCTCCTTGAGGAAGGATACAACTTCTAGTGACAATTATGAAGAATCTCTTCCACCATCACCACTACCAAACACTTCATTACTTCCTAGTCCTCCTGCTAGAACATCCTCTGCCAAATCATTTGTTGGAATCGATATACCTTCTCATACTCAAGAGGGGTATATTGCTGAAATTGTGAAGAAGAAGGACTTAATATCTCTTCTTAAGTTTGGTGGGGTTGATCGCGTTTGTGAAATTCTACATGGTCAAACTCATCACCCATTAGAGATCACTGGGAACCTTGGAACAAGCTTCTCTAGCATTTTATGGAATAGCTGCAAACACAATCGTTACACAATTTCAATGATGTTGATTTCGGCCTCATTGTCCTTTGCCACGGAACTCAAGCAGGAGGGACGGAAATATGGTTGGCATGATGGTGTTGCTATGGTTTTTTTTGTTTTACTTCTGCTCGCATTCTCTTCAATAACTAACTTTTGGTGCGAACGAAAAATGGTGAAATTGGCAAAGAGAAAAGGCCAGGAGGTGAAGTTCAATGTTAAAAGAGGTGAACATGATCTTGTTCTTCCCGTATACGATATTGTTGTGGGTGACATCGTGTGTTTGAGTCCCCGTGATGAGGTTCCTGCTGATGGTTTGCTTGTGAGTGGCGACGTCCTTGTGCTGGATGATGGAATACAAAATGAAAAAATTGATTGTAGGGAGAACCCATTTCTTATAGCTGGTTCAAAGGTGATTGAGGGTCATGGACAGATGGTTGTGACATCAGTTGAAAACAAGCTGAATGTGGCTGAGATGAAAGGCTCAATGAATTGTAATTTTGAAAAGAAAGGCCTTTTGTACAGTCTAATTGAGAAGCCAATTTCTAACCTTGACAAAGCCTCTCTTTTAATCTTTACACTCGTTGCATTTGTATTGTTCATTCGCCTAATTTGTAAAAAAGATGGAGATGGTGGCGGATTGCCGGAAATTAAAGGGAATAATGTTTCAATTGGCCTGTTGGCGCAACTCCTTGAGAACATTTTTTTGAGACCACGAGGAAATATTTCCATTTTAGCAGGACTTTTTAGTGTTGTAATGCTGTGTGTACAACATGGAGTGCCACTTATGGTTACTTTATCTCTCCATTACCAGAATGATAAACTGGTGGTTAATCAAGAAGTTGTTCATAATGATTTGTCAGCTTGTACAACAATGGGGTTGGTGACTGTTATATGCATTGATGTATCTGGTGGGATCATACCAAAACCAATGGAGGTTAAAATCTGGGTGGGAGAGGGGGAGAGAGATATGAGCATGGTTGAGGAACCAGAAACACGTTTTGTACTTGACAAGCTTAAACAAGGACTTGGTTTATCAGTTCTTGCACCAGGACTATCTCCTTCTCCTGTGTCCAATTCACTTGTTTCGTGGGCAGAAAAAACATGGAAAATGGACATTTTATCTTTCAGAGAAGATTTTCACATTCTTAAGCATAGCAAACTGGATTCTAACCAAGAGGGCAGTGGAGTTTTGGCAAGAAAAGTTAGGGTCAATGAACAAGTTATGCACGTGCACTGGAGCGGGGATGCACCCACGATATTGGAAATGTGTTCGCAATACTATGACAGTGAAGGAGCATGTCATTCCATAGAAAATCAGAAACTTAAATTTAGGCAGGTGATTCAAGAGATGGAGGATAATGGCCTTAAGCCAATTGCATTTGCTTGTAGAGAAACACAAGTGCAAGAACTGGAGCAAGATGAATTGACCTTGTTAGCACTGGTAGGTCTCAAATTCAAGTGTCAAGAATCAACAAAATTAGCTTTGCAAAATCTCAAGAATAATGGAATAGAAATCAAATTGGTCTCGGAGGATGACATCATGGTAGTGAAAGACATGGCTTGTGAACTGAGAATAGAAGTGCCGATAAATGGTCACCTTGAAGGAAAAGAACTTAAAGATTTGAATGACAAAGAAAGATTAGTTAAAGTGGATCAAGCCATTGCAATGGGAAGTTTCAGTCCTAAAGACAAGCATCTCATGGTTAGGTGTTTGCAAGACAAAGGTGATGTGGTTGCATTCATTGACCAAGAAAGGTTGATGACCAATCATAATTCAGAAGTTCTAAAGCTAGCTGATGTAGGGATAGTTCATAACTCTCTAAGAAGAACAATTGATGGTAGAGAGAAATCTGGTATAACTATCACATGTTTCAGTGCACTGGTACCAATCATTAAGGCTGGCAGAAGTAAATATCACAATATTCAAAAGTTCATTCAACTTCAGATGACAGTTGGTATATCAGGGTTACTCATAACCTTGATTACAACAATATTCACAGGAAACTCTCCCTTAACAGCAATCCAATTGATTTGGGTGAACATGCTAATGTGTATTCTGGGCGGTCTAATGATGGTGATGGAATTAAGTAGTGAGGATGAACAAAAACAACCATCTGGTAGGAATCAACCAATTATAACCAAGAAAATATGGAAAAACATAGTTTTTCAGGTTTTCTATCAAGCTTCTGCATGTATGATACTTGAGTTTGGGGGACACGTAACTGACAGTGAAAAGCAAGTTGTGGTAATTGAGTATGCAAAAGGCTTAGCAGATTGCATGCGGCTGAATGCCGCTCGATGGGCTATCTGTGTCCTGGTCAGTGCTGTTCCATGGGTACTTGAATGGACCTTGAAGAAGATTTTTTCAGTTTTTTTCAGCACCAATTATAGTTCACCCTTGGACTCTCGAGAGTCAACCCCACAACCTTTGTTCTATCTTTATTGGGGGCTTCCATTTATGATGCTTCTTTTGTTCCCTATAGGACTAGCAGGTATGACATTTCATTGA 2982 0.3954 MSQASMSSESDGGNIELGASLLLATTTTTSSNKYNKIWHRSKILLYIKVIISLRKDTTSSDNYEESLPPSPLPNTSLLPSPPARTSSAKSFVGIDIPSHTQEGYIAEIVKKKDLISLLKFGGVDRVCEILHGQTHHPLEITGNLGTSFSSILWNSCKHNRYTISMMLISASLSFATELKQEGRKYGWHDGVAMVFFVLLLLAFSSITNFWCERKMVKLAKRKGQEVKFNVKRGEHDLVLPVYDIVVGDIVCLSPRDEVPADGLLVSGDVLVLDDGIQNEKIDCRENPFLIAGSKVIEGHGQMVVTSVENKLNVAEMKGSMNCNFEKKGLLYSLIEKPISNLDKASLLIFTLVAFVLFIRLICKKDGDGGGLPEIKGNNVSIGLLAQLLENIFLRPRGNISILAGLFSVVMLCVQHGVPLMVTLSLHYQNDKLVVNQEVVHNDLSACTTMGLVTVICIDVSGGIIPKPMEVKIWVGEGERDMSMVEEPETRFVLDKLKQGLGLSVLAPGLSPSPVSNSLVSWAEKTWKMDILSFREDFHILKHSKLDSNQEGSGVLARKVRVNEQVMHVHWSGDAPTILEMCSQYYDSEGACHSIENQKLKFRQVIQEMEDNGLKPIAFACRETQVQELEQDELTLLALVGLKFKCQESTKLALQNLKNNGIEIKLVSEDDIMVVKDMACELRIEVPINGHLEGKELKDLNDKERLVKVDQAIAMGSFSPKDKHLMVRCLQDKGDVVAFIDQERLMTNHNSEVLKLADVGIVHNSLRRTIDGREKSGITITCFSALVPIIKAGRSKYHNIQKFIQLQMTVGISGLLITLITTIFTGNSPLTAIQLIWVNMLMCILGGLMMVMELSSEDEQKQPSGRNQPIITKKIWKNIVFQVFYQASACMILEFGGHVTDSEKQVVVIEYAKGLADCMRLNAARWAICVLVSAVPWVLEWTLKKIFSVFFSTNYSSPLDSRESTPQPLFYLYWGLPFMMLLLFPIGLAGMTFH* 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0300 993 PANTHER CATION-TRANSPORTING ATPASE PLANT 82 905 - -
Tpr4g0300 993 PANTHER CATION-TRANSPORTING ATPASE PLANT 904 961 - -
Tpr4g0300 993 Gene3D - 298 464 - -
Tpr4g0300 993 Gene3D - 780 905 - -
Tpr4g0300 993 PANTHER CATION TRANSPORTING ATPASE 82 905 - -
Tpr4g0300 993 PANTHER CATION TRANSPORTING ATPASE 904 961 - -
Tpr4g0300 993 Gene3D - 200 297 - -
Tpr4g0300 993 Gene3D - 638 779 IPR023214 -
Tpr4g0300 993 Pfam Cation transporting ATPase, C-terminus 827 898 IPR006068 -
Tpr4g0300 993 SUPERFAMILY HAD-like 598 845 IPR036412 -
Tpr4g0300 993 Pfam E1-E2 ATPase 227 359 - -
Tpr4g0300 993 Gene3D - 504 637 IPR023299 GO:0000166
Tpr4g0300 993 Coils Coil 591 611 - -
Tpr4g0300 993 SUPERFAMILY Calcium ATPase, transmembrane domain M 146 950 IPR023298 -
Tpr4g0300 993 SUPERFAMILY Calcium ATPase, transduction domain A 227 308 IPR008250 -
Tpr4g0300 993 MobiDBLite consensus disorder prediction 60 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0300 Tpr-Chr4 3011673 3017010 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0300 162 945 Primary Pumps ATPases AT3G22910 30.974 3.18e-113 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0300 K01537 - gmx:102661547 933.71