Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0288 ATGGCATCCAAATCCTCTAGCATCTCTGCCACTTCACAAGATCAAGGTGATTCTTCCAACTCAAAAAAAGTGGCGATCATGAAGGAAATCGGACAAGATCAACCCTCAAACTCCAATTCCAACAAGCCCATCGATGTCGTGAAACTATCGAAAGAGGATTCGGTTGTCGGATCAAAGGTGCAAGAGCGAGATTTTATTGGCGGTCCTATTCAAGTTGGTTCATCATCTGGTTTTCCAAGTAACAACAACGGAAAGAAACATAAGAACAACGGTAAAAAGGATAATTCAAATTCCAGGTCTTTTTCATGCTCCTTTTGTAAGAGACAATTTCCTACTTCACAAGCGTTAGGAGGACACCAGAATGCTCATAAGGCAGAACGCACTTTAGAAAAGCAACGGAAACAAAGATATAATAGTGGTGCTTTAGGTTTAGGGCAACCTCACTTTAGCCCTTATTATAGTTATCCAAGTACTTATTTTACATCTCCTTATTATAGGGCACTTGGGACTAGAATGGAGTCCTTGATTCAAAAACCATCTTATTTTAAACCTAGGATTGACCCCCCATATAGGCTTGGGTATGGTCATGGTGCTATATGTTTGCAAGAGACATTAAATCCTTCTCTTGTGTCATTAAGAAATATGAGAGGTGGTAATAGCGGAGTTGGAAATCTAGATATTGATGGTACATCTACTTTAAGGATCGAAGATGGTACAAATAATAAAATTGGTGCTATTCTAAAATTTGAAGATTCTTTTACAAATATTGCTACAAGTTCAAACTTAGACATAGGGAAAAAAATTGTTGTGGCTCCTACTCCTATCAAGGATGATATTCATCGATCAAAGTCCAACATTGAAGAAGAAATCTCCAACTCTGACAAATCTTTCGGGCTTGATTTGTCACTTAAGCTTTAA 918 0.3791 MASKSSSISATSQDQGDSSNSKKVAIMKEIGQDQPSNSNSNKPIDVVKLSKEDSVVGSKVQERDFIGGPIQVGSSSGFPSNNNGKKHKNNGKKDNSNSRSFSCSFCKRQFPTSQALGGHQNAHKAERTLEKQRKQRYNSGALGLGQPHFSPYYSYPSTYFTSPYYRALGTRMESLIQKPSYFKPRIDPPYRLGYGHGAICLQETLNPSLVSLRNMRGGNSGVGNLDIDGTSTLRIEDGTNNKIGAILKFEDSFTNIATSSNLDIGKKIVVAPTPIKDDIHRSKSNIEEEISNSDKSFGLDLSLKL* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0288 305 SUPERFAMILY beta-beta-alpha zinc fingers 98 129 IPR036236 -
Tpr4g0288 305 MobiDBLite consensus disorder prediction 1 46 - -
Tpr4g0288 305 MobiDBLite consensus disorder prediction 31 45 - -
Tpr4g0288 305 Gene3D Classic Zinc Finger 78 142 - -
Tpr4g0288 305 MobiDBLite consensus disorder prediction 61 97 - -
Tpr4g0288 305 PANTHER ZINC FINGER PROTEIN KNUCKLES 79 305 - -
Tpr4g0288 305 PANTHER ZINC FINGER PROTEIN JAGGED 79 305 IPR045320 GO:0003700
Tpr4g0288 305 MobiDBLite consensus disorder prediction 1 22 - -
Tpr4g0288 305 Pfam C2H2-type zinc finger 101 125 - -
Tpr4g0288 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
Tpr4g0288 305 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0288 Tpr-Chr4 2903631 2904548 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0288 93 156 C2H2 Transcription Factor Family AT5G01860 48.438 1.51e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0288 - - mtr:MTR_3g011970 318.161