Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0275 ATGGAAAATATGAGAGAGAATGAGATTGAGGACAATATGTCAATGTCACCTCCGTCCGTTGGTTCCATGCAGATTGCAGGAAGCAATGGCTTTGGTCACAGCATGGACTTCATGTCTCAGTCATACCTTATTAATAGGTACTCAGAGATTGATATACAAGTTCAGGATTCTAGTTTCAACCAAGAGCCCCCTCTTCCTGTATATCTCAAGTTTGAAGATGTTGAGTTCAAAGTGAGAAATAGCCAAATAGTTTCAAAAAACCCTGTGAAGACAATGATGTCAAAGGTATCCACACAAAACAATGTGGAAGAAAGAAACAAATACAAGAAAATTTTAAAAGGTATCACAGGAAGCATTGGCCCGGGCGAAATTCTAGCTTTGATGGGTCCTTCTGGTAGTGGAAAGACAACATTGTTGAGTGTTATCGGAGGAAGATTAAATAATGATAATGTAAAAGGAAAGATAACTTACAATGATGTTCCATATAGTCCTGCTCTCAAGAGGAGGATTGGTTTTGTTCCACAAGAGGATGTGCTTTTTCCACAACTTACGGTCGAAGAAACATTAATCTTCTCTGCATTTTTAAGGCTACCAACCAACATGACCAAGCAACAAAAATATGCAAGACTTGAGAACACTATCAAGGATCTAGGCCTAGAAAGATGCCGCCACACGAAAATAGCTGGAGGCATATCAGGAGGAGAAAGGAAAAGAACCAGCATTGGCTATGAAATTCTTGTTGATCCTTCACTGCTGCTACTTGATGAGCCAACTTCAGGCCTTGATTCCACCTCAGCAAACAAACTCCTTCTCACTCTTCAGGGACTAGCCAAAGCTGGAAGAACTATAATCACAACAATTCACCAGCCATCAAGCAGAATCTTTCACATGTTTAGCAAACTTCTTCTGATATCAGAAGGCTCTCCTGTTTTTTATGGGAAGGCTAAAGACACAATGGAGTACTTTTCATCCTTGAGGTTTGTCCCGGAAATACCGATGAATCCAGCAGAATTCTTGCTTGACTTGGCAACTGGACAACTAAATGATATAAGTATTCCACAAGATATTTTCAAAGATCATGAATCTACTGACCCTTCAGCGGTTGTTATTAATTATGTACAACTAAAGTATAAAGAAATACTTGAGCCAAAAGAAAAAGAGAATCATAAAGGAGCAAACACACCAAAACATCTTCAACTAGCTATTCAGGTTAAGAAAGAATGGACATTAAGTTGGTTAGACCAATTTGTTATTCTTTATAAGAGATCATTCAAAGCAAGATGCATGGAATATTTTGATATATTAAGACTTGTTCAAGCACTTGGAATTGCACTTTTGTTGGGACTACTTTGGTGGAAATCTTCAATCAATACAGAAGCTGAACTCCGAGATCAGGTTGGTTTAATGTTCTATATTTGTATATTTTGGACATCTACATGTATTTTCGGAGCTGTCTATGTATTTCCGTTCGAAAAGGTTTACTTACGAAAAGAAAGGAAAGCAGACATGTATAGACTAAGTGTATACTATGCAAGCAGTACTCTATGTGACATGATGGCACATGTTATGTATCCTACTATTTTCATGCTCATTGTGTACTTCATGGCTGGATTTAAGAGCACTGCGGCTTGCTTCTTCCTTACGTTATTCACAATTTTGCTAATAGCTATAACAAGTCAAGGGGCAGGAGAATTATTTGGAGCTGCAGTTATGAGTATTCAAAGAGCAGGAATGGTTGCTTCTTTGATACTTATGTTATTCCTTCTTACAGGTGGCTACTATGTTCAGCATATACCAAAGTTCATGCAATGGATGAAGTATATGTCATTCATGTACTATGGATTCAGGCTTCTACTAAAAGTGCAATATTCAGGAGACCAACTATATGAATGTGAAAGTGAGGGAGGTTGTAGGCCACTTCAAACTTCACCTTCATTTGATACTGTAAACTTGAAAGGAGGTTTGAGTGAAGTTTGGGTTCTGCTAGCTATGGCTCTTTGTTTTAGGTTGTTGGCTTACTTTTGTCTCCGCAGAAGAATTGACAAAAGAAATTAG 2055 0.3805 MENMRENEIEDNMSMSPPSVGSMQIAGSNGFGHSMDFMSQSYLINRYSEIDIQVQDSSFNQEPPLPVYLKFEDVEFKVRNSQIVSKNPVKTMMSKVSTQNNVEERNKYKKILKGITGSIGPGEILALMGPSGSGKTTLLSVIGGRLNNDNVKGKITYNDVPYSPALKRRIGFVPQEDVLFPQLTVEETLIFSAFLRLPTNMTKQQKYARLENTIKDLGLERCRHTKIAGGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLLLTLQGLAKAGRTIITTIHQPSSRIFHMFSKLLLISEGSPVFYGKAKDTMEYFSSLRFVPEIPMNPAEFLLDLATGQLNDISIPQDIFKDHESTDPSAVVINYVQLKYKEILEPKEKENHKGANTPKHLQLAIQVKKEWTLSWLDQFVILYKRSFKARCMEYFDILRLVQALGIALLLGLLWWKSSINTEAELRDQVGLMFYICIFWTSTCIFGAVYVFPFEKVYLRKERKADMYRLSVYYASSTLCDMMAHVMYPTIFMLIVYFMAGFKSTAACFFLTLFTILLIAITSQGAGELFGAAVMSIQRAGMVASLILMLFLLTGGYYVQHIPKFMQWMKYMSFMYYGFRLLLKVQYSGDQLYECESEGGCRPLQTSPSFDTVNLKGGLSEVWVLLAMALCFRLLAYFCLRRRIDKRN* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0275 684 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 4 680 - -
Tpr4g0275 684 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 96 331 IPR003439 GO:0005524
Tpr4g0275 684 SMART AAA_5 121 308 IPR003593 -
Tpr4g0275 684 Coils Coil 200 220 - -
Tpr4g0275 684 Pfam ABC transporter 112 259 IPR003439 GO:0005524
Tpr4g0275 684 Pfam ABC-2 type transporter 288 347 IPR043926 GO:0140359
Tpr4g0275 684 CDD ABCG_EPDR 106 313 - -
Tpr4g0275 684 Gene3D - 98 326 IPR027417 -
Tpr4g0275 684 PANTHER ABC TRANSPORTER G FAMILY MEMBER 26 4 680 - -
Tpr4g0275 684 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 324 IPR027417 -
Tpr4g0275 684 Pfam ABC-2 type transporter 415 623 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0275 Tpr-Chr4 2794421 2798535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0275 110 292 Calmodulin-binding Proteins AT2G36910 29.353 9.65e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0275 K05681 - gmx:100815259 1118.99