Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0219 ATGGCTGATTCAGATAACGAGTCAGGAGGAGCACCGAACGCCGGTAACAGCGAGTTATCACCACGAGAACAAGATCGATTCCTACCGATAGCGAACGTAAGCAGAATAATGAAAAAAGCGTTACCTGCAAATGCGAAGATCTCGAAAGACGCGAAGGAAACAGTTCAGGAATGTGTATCGGAGTTCATCAGTTTCATCACCGGTGAAGCTTCCGATAAGTGTCAGAGAGAGAAACGAAAGACGATCAACGGTGACGATCTACTTTGGGCGATGACTACGTTAGGTTTTGAAGAGTATGTTGAACCGTTGAAGATTTATCTTCAACGATTCAGAGAGATCGAAGGTGAAAAAACCGTTGCTGCACGTGATAAAGACGTTGCTCCTTCTTCTTCATCATCTTCTGTTTTCGATTACGGTGCTCCTCCTCAGGTTGGAATGATCATGCATCATCAGCAAGAACATCAGCAGCATCAGGGACACGTGTACGGTTCTGGTGGTTTTCATCAAGTGCCAGGTGGACCTGGTTATCCTAATGCTGGATCTAATGCGGGTAGACCCAGGTAG 564 0.461 MADSDNESGGAPNAGNSELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQRFREIEGEKTVAARDKDVAPSSSSSSVFDYGAPPQVGMIMHHQQEHQQHQGHVYGSGGFHQVPGGPGYPNAGSNAGRPR* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0219 187 MobiDBLite consensus disorder prediction 1 24 - -
Tpr4g0219 187 MobiDBLite consensus disorder prediction 150 187 - -
Tpr4g0219 187 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 162 IPR027113 GO:0001228|GO:0006355|GO:0016602
Tpr4g0219 187 Gene3D Histone, subunit A 16 160 IPR009072 GO:0046982
Tpr4g0219 187 SUPERFAMILY Histone-fold 24 152 IPR009072 GO:0046982
Tpr4g0219 187 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Tpr4g0219 187 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Tpr4g0219 187 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Tpr4g0219 187 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 162 - -
Tpr4g0219 187 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
Tpr4g0219 187 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0219 Tpr-Chr4 2297913 2299269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0219 1 121 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.777 4.10e-75 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Tpr4g0219 CBFD_NFYB_HMF 1.7e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0219 K08065 - gmx:100813580 268.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g0219 4 2297913 2299269 Tpr4g0219 4 2297913 2299269 ECH