Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0206 ATGATGTTTTCTTGTAGAGTTGTCGTTGTTTTGTTTGTTTTGGTTTTTGTTATGATGATGGTTGAGGTGGATTTAGTAGAATGTGGTAATGGAGGTGTTAGGAATTATATTAGTTGGGAAGATATGATGGTTGATGAACAAAGATTAGTTCTTAAGAAGAATATTAATCATAATGAGAGAGTTATTATTGTTGATCAGAATGGATATGGACATTCTAAAACTGTTCAAGGTGCAGTTGATTTAGTTCCTGATTGGAATCAACACCGAGTCAAAATCTACATTTTTCCCGGAATTTACAGAGAAAGAGTGTTTGTGCCAATCACAAAACCTTATATATCATTTATAGGTAGAAGAAATGAAACAGCAAGTCCTGTAATTACATGGAACAGTAAATCGTCAGATAAAGGTCCAAATGGTCAAACATTGGGAACTTATGGTTCAGCAACTGTAGCAATTGATTCAAATTTTTTCTGTGCAACTGAGGTTACTTTTGAGAACACAGTGGTTGCATTAGCAGGTGGACAAGGAATGCAAGCAGTTGCACTAAGAGTAAACAGTGATAAAGCAATGTTTTATAGAGTTAAGATTAAAGGAACACAAGACACTCTCTTGGACAACACAGGAACTCACTACTTCTATAGATGTATCATCCAAGGAAAAGTTGATTTCATCTTTGGCAGTGCAAAATCACTTTATGAGAAATGTAGGCTTCAATCAATAGCTGAGAACTTTGGAGCAATTGCAGCACACCATAGAGATTCACCACTTCAAGATACAGGATTTTCTTTTGTAAGATGCAGTATTAGAGGAACAGGAAATATTTTACTCGGAAGAGCATGGGGAGCCTACTCGAGAATAATTTACTCAAGTTGTAATATGGATGATATTATTAAACCTGAAGGCTGGTCAGAATGGAATCATCCAGATAGAAGAAAGACTGCAGTGTTTGGTGAATATAATTGCCATGGAAAAGGAGCAGATAGAATACAAAGGGTACCTTGGTCAAAAGCATTAAGCTATGGAGAAGCAAAGCCTTACTTGGACATTAACTTCATAAATGGAAATCAGTGGCTCAGACTATAG 1083 0.3592 MMFSCRVVVVLFVLVFVMMMVEVDLVECGNGGVRNYISWEDMMVDEQRLVLKKNINHNERVIIVDQNGYGHSKTVQGAVDLVPDWNQHRVKIYIFPGIYRERVFVPITKPYISFIGRRNETASPVITWNSKSSDKGPNGQTLGTYGSATVAIDSNFFCATEVTFENTVVALAGGQGMQAVALRVNSDKAMFYRVKIKGTQDTLLDNTGTHYFYRCIIQGKVDFIFGSAKSLYEKCRLQSIAENFGAIAAHHRDSPLQDTGFSFVRCSIRGTGNILLGRAWGAYSRIIYSSCNMDDIIKPEGWSEWNHPDRRKTAVFGEYNCHGKGADRIQRVPWSKALSYGEAKPYLDINFINGNQWLRL* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0206 360 Pfam Pectinesterase 62 355 IPR000070 GO:0030599|GO:0042545
Tpr4g0206 360 Gene3D - 56 360 IPR012334 -
Tpr4g0206 360 PANTHER PECTINESTERASE QRT1 14 360 - -
Tpr4g0206 360 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 14 360 - -
Tpr4g0206 360 SUPERFAMILY Pectin lyase-like 60 358 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0206 Tpr-Chr4 2150417 2152766 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0206 1 312 Carbohydrate Esterase AT5G55590 54.518 4.75e-126 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0206 K01051 - gmx:100804220 519.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g0206 4 2150417 2152766 Tpr4g0206 4 2150417 2152766 ECH