Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0178 ATGTTGGAGTTGGGTTTTGTTTCAACTTCACTCATGAACAATGGAACTGATTTTCTTGTTAAACCCATTTTCCTTCATGGGTTATCTAGTTTACTTCATGTAGTGTTGCTTGTGGCTGTTTTAGTTTCATGGGTTTGGAGAAAAATCAAAACTTGTGTTGTGAATGAGTCTAAGGAGGAGAAACTTAATAGTACTTTGTTTAAAGTGACAAAGTTTTGTTCTATTGGTTTTTCTTTCTTAAATTTTGTTCTGTTTTTGTTTAATTATTTTTACGGGTATACTAATGGTTGGTCAGATGAAAAAGTTGTTACCCTTTTTGATTTAGGTTTAAAAACAGTTTCTTGGTTTGTTATTTGCGTTTGTTTCCACAAAGGGTTCTTGTTTTTCTTCAGTTCAGGTCAAAGAAAAACAAGGTTTCCATTCTTCTTTAGAGCTTGGTGTGTCTTCTATCTCATTGTTGCATGTTATTGTTTTGTGGTTGACATTGTTGTTTTTTATGAAAATCACATTGAGTTAACTGCCCAATCCATGGTTTCTGATGTAGTGTCTTTTTGTGTTGGTTTGGTCTTCTGTTATGTGGGGTATTTTGTGAGAAATGAGAGTGAAGAAGGTGATAGAACTATTCAAGAACCTCTTTTGAATGGTGATACACATGTTGGTAATGGTAATGTTAATCCCTTGGGGTTAAAAGAGACTAAAGGGAGTGACACTGTTACTCCTTTTTCAAATGCTGGAATTTTGAGCCTTCTCACTTTCACTTGGGTGGGACCCCTTATAGCATTTGGCAATAAGAAAACCTTAGACCTTGAGGATATTCCTCAGCTAGATAGTGGAGATAGTGTAGTTGGAGCTTTTCCAACTTTTAGAAACAAACTTGAAGCTGATTGTGGTGCAGTCAATAGAGTAACCACACTTAAGTTGGTTAAGTCATTGTTAATCTCTGCGTGGAAAGAGATTCTTATCACTGCTTTTCTTGCATTGTTAAACACTTTAGCTTCTTATGTTGGTCCGTATCTTATTGATTCTTTTGTTCAATATCTTGATGGAAGAAGGCTATATGAGAATCAAGGCTATGTGTTGGTTTCTGCATTTTTCATTGCAAAGATTGTAGAATGCCTAACACAGAGGCATTGGTTCTTTAGGTTGCAGCAAATCGGACTTCGATTCCGAGCACTGCTTGTCACTATGATATATAACAAAGCCTTAACACTTTCCTGTCAATCAAGACAATGCCACACTTCTGGAGAAATAATCAATTTCATGACCGTTGATGCTGAAAGAGTCGGTGTTTTCAGTTGGTACATACATGATTTGTGGTTAGTAGTTTTGCAAGTTACATTGGCGTTGATCATTTTATATAAAAATTTGGGGCTTGCTTCCGTTGCTGCTTTTGTTACTACTATCATTATTATGCTGGCAAATGTTCCCTTGGGATCATTGCAAGAGAAGTTTCAAAATAAGTTGATGGAGTCAAAGGATACAAGAATGAAGACAACATCTGAAATTTTAAGGAACATGAGGATTCTCAAACTACAAGGATGGGAAATGAAGTTTCTATCTAAAATAACTGAGCTTAGGGATGCCGAACAAGGGTGGTTGAGAAAGTTTCTTTATACTTCAGCCTTGACTACATTTGTCTTTTGGGGTGCACCTACATTGGTATCAGTGGTTACTTTTGGTACTTGTATGCTTATAGGGATCCCACTTGAATCGGGGAAGATTCTGTCAGCACTTGCAACAATCAGGATTCTTCAAGAGCCTATTTATAATCTTCCAGATTTTATTTCAATGATAGCACAGACTAAAGTTTCTCTCGATAGGATCTCTTCGTTCCTTCGTCTCGATGACTTGCAATCGGATGTTGTTGAAAAGCTTCCTCCGGGAAGTTCTGATACTGCGATTGATGTGGTTGATGGGAATTTTTCTTGGGATTTATCTTCACCTAATCCCACTTTGCAGAACATAAATCTCAGAGTTTTTCAAGGCATGAAGGTTGCTGTTTGTGGTACAGTTGGATCAGGCAAGTCTACTTTACTTTCTTGTGTATTGGGAGAAGTACCAAAGATATCTGGTGTCCTTAAGGTTTGTGGAACAAAGGCTTATGTTGCTCAATCACCATGGATTCAAAGTGGCAAGTTAGAGGATAATATATTGTTTGGTGAACACATGGTTAGGGAAAGGTATGAGAAGGTACTTGAAGCATGTTCCTTAAAGAAGGATCTGGAAATCTTGTCATTTGGTGATCAGACGATTATAGGCGAACGTGGGATAAATTTGAGTGGTGGACAGAAACAACGAATACAAATTGCTCGCGCTCTTTACCAAGATGCTGATATCTATCTATTTGATGATCCTTTTAGTGCTGTGGATGCTCATACAGGATCTCACCTTTTCAAGGAATGTTTGTTTGGCGTTTTAAGTTCAAAAACAGTTGTTTATGTTACTCATCAAGTGGAGTTCTTACCTACTGCTGACCTTATATTGGTCATGAAAGATGGAAAAATTACTCAAAGTGGAAAGTATGCCGATCTGCTCAACATTGGGACCGATTTTATGGAACTCATCGGCGCACACAGAGAAGCTATGTCTACACTCGAATCAATGGATGGAGGGAAAACATCTAATGAAATAAGTACCTTAGAAAAAGCTGTAAATATCGCCGGCAATCATGAAGAGTTAAACAAAGATGAGCAAAATGGTGATAAAGGAGAACCAAAAGGCCAACTTGTTCAAGAAGAAGAAAGGGAGAAAGGTAAAGTCGGATTTTCAGTCTATTGGAAATATATCACAACTGCATATGGAGGAGCTCTTGTACCGTTCATATTATTGGCTCAGATTCTTTTTCAAGCTCTTCAAATTGGAAGCAACTATTGGATGGCTTGGGCAACTCCCATCTCAGCCGACGTGGAGGCACCGGTTGAAGGAACAACTCTAATTGAAGTCTATGTTGGTTTGGCCATTGGAAGTTCTTTATGCATTCTTGTTAGAGCATTGATACTTGTTACAGTCGGTTATAAGACAGCCACTATACTCTTCAATAAAATGCACTTGTGCGTTTTTCGCGCCCCTATGTCATTTTTTGATTCTACTCCAAGTGGACGAATCCTTAATAGGGCTTCAACCGACCAAAGTGCAGTGGATACTGACATTCCTTATCAAATTGGCTCATTTGCCTTCTCCTTGATCCAGCTTCTAGGAATTATAATAGTGATGTCTCAGGTGGCATGGCAAGTTTTCATCGTGTTTGTACCCGTGATAGCAATTAGCATTTGGTATCAGCGATATTATTTACCATCAGCCCGTGAACTATCACGTTTATGTGGAGTATGCAAAGCCCCAATCATTCAACACTTTGCCGAAACAATATCTGGTACTTCAACCATTAGAAGCTTTGATCAACAGTCAAGATTCCATGAAACAAATATGAAACTGACTGATGGGTATTCTCGGCCAAAGTTCAATATCGCAGCTGCTATGGAATGGTTATGCTTTCGTTTAGATATGTTGTCTTCTTTCACATTTGCCTTTTCCTTGATATTCTTGATATCAATTCCAGCCGGAATCATAAATCCAGGCATTGCTGGTCTAGTTGTTACCTATGGTCTAAATTTAAACATGATACAAGCTTGGGTAATATGGAATCTTTGTAATTTAGAGAACAAAATTATATCTGTGGAAAGGATGCTTCAGTATACAACCATTCCTAGCGAGCCTCCGCTTGTTTCAGAAGAAGAAAAAAGGCCAGATCCTTCTTGGCCCGCATATGGCGAGGTTGATATAAGAAACTTGCAGGTTCGATATGCTCCACATCTGCCGCTCGTGTTGCGTGGCCTAACATGTACGTTTCGTGGAGGACTGAAAACTGGCATTGTTGGTAGAACAGGTAGCGGCAAATCAACTCTTATACAAACACTTTTCCGACTCGTTGAACCTACTGCTGGGGAAGTTATCATCGACAACATCAACATCTCTACCATTGGACTGCATGATTTGAGGTCTAGACTAAGCATTATTCCACAGGATCCAACAATGTTTGAGGGGACTGTGAGAAGTAATCTTGACCCTCTGGAAGAGTACAATGATGAACAAATATGGGAGGCCTTGGATAAGTGTCAACTGGGAGATGAAGTTAGAAAGAAAGAAGGAAAGCTCGATTCTCCAGTTAGCGAGAATGGTGAGAATTGGAGCATGGGTCAGAGGCAGTTGGTATGCCTTGGTAGGGTACTACTTAAGAAGAGCAAGATTTTGGTGCTTGATGAAGCCACTGCATCAGTTGATACAGCTACAGATAATTTGATTCAACAAACTCTTAGGCAGCATTTCACTGACTCTACAGTTATTACCATTGCGCATCGAATAACTTCTGTTCTTGACAGTGATATGGTTCTACTTCTTAGTCAAGGACTTATTGAGGAGTATGACTCCCCAACCACATTACTAGATGATAAGTCATCATCTTTTGCTAAGCTTGTTGCAGAGTATACCATGAGGTCCAGCTCCAATTTTGAGAAATCTGTTGATCACTGA 4527 0.389 MLELGFVSTSLMNNGTDFLVKPIFLHGLSSLLHVVLLVAVLVSWVWRKIKTCVVNESKEEKLNSTLFKVTKFCSIGFSFLNFVLFLFNYFYGYTNGWSDEKVVTLFDLGLKTVSWFVICVCFHKGFLFFFSSGQRKTRFPFFFRAWCVFYLIVACYCFVVDIVVFYENHIELTAQSMVSDVVSFCVGLVFCYVGYFVRNESEEGDRTIQEPLLNGDTHVGNGNVNPLGLKETKGSDTVTPFSNAGILSLLTFTWVGPLIAFGNKKTLDLEDIPQLDSGDSVVGAFPTFRNKLEADCGAVNRVTTLKLVKSLLISAWKEILITAFLALLNTLASYVGPYLIDSFVQYLDGRRLYENQGYVLVSAFFIAKIVECLTQRHWFFRLQQIGLRFRALLVTMIYNKALTLSCQSRQCHTSGEIINFMTVDAERVGVFSWYIHDLWLVVLQVTLALIILYKNLGLASVAAFVTTIIIMLANVPLGSLQEKFQNKLMESKDTRMKTTSEILRNMRILKLQGWEMKFLSKITELRDAEQGWLRKFLYTSALTTFVFWGAPTLVSVVTFGTCMLIGIPLESGKILSALATIRILQEPIYNLPDFISMIAQTKVSLDRISSFLRLDDLQSDVVEKLPPGSSDTAIDVVDGNFSWDLSSPNPTLQNINLRVFQGMKVAVCGTVGSGKSTLLSCVLGEVPKISGVLKVCGTKAYVAQSPWIQSGKLEDNILFGEHMVRERYEKVLEACSLKKDLEILSFGDQTIIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLFGVLSSKTVVYVTHQVEFLPTADLILVMKDGKITQSGKYADLLNIGTDFMELIGAHREAMSTLESMDGGKTSNEISTLEKAVNIAGNHEELNKDEQNGDKGEPKGQLVQEEEREKGKVGFSVYWKYITTAYGGALVPFILLAQILFQALQIGSNYWMAWATPISADVEAPVEGTTLIEVYVGLAIGSSLCILVRALILVTVGYKTATILFNKMHLCVFRAPMSFFDSTPSGRILNRASTDQSAVDTDIPYQIGSFAFSLIQLLGIIIVMSQVAWQVFIVFVPVIAISIWYQRYYLPSARELSRLCGVCKAPIIQHFAETISGTSTIRSFDQQSRFHETNMKLTDGYSRPKFNIAAAMEWLCFRLDMLSSFTFAFSLIFLISIPAGIINPGIAGLVVTYGLNLNMIQAWVIWNLCNLENKIISVERMLQYTTIPSEPPLVSEEEKRPDPSWPAYGEVDIRNLQVRYAPHLPLVLRGLTCTFRGGLKTGIVGRTGSGKSTLIQTLFRLVEPTAGEVIIDNINISTIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYNDEQIWEALDKCQLGDEVRKKEGKLDSPVSENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNLIQQTLRQHFTDSTVITIAHRITSVLDSDMVLLLSQGLIEEYDSPTTLLDDKSSSFAKLVAEYTMRSSSNFEKSVDH* 1509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0178 1508 CDD ABCC_MRP_domain1 634 834 - -
Tpr4g0178 1508 CDD ABC_6TM_ABCC_D1 321 608 IPR044746 GO:0140359
Tpr4g0178 1508 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 320 600 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr4g0178 1508 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 111 1504 - -
Tpr4g0178 1508 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 111 1504 - -
Tpr4g0178 1508 Gene3D - 1240 1494 IPR027417 -
Tpr4g0178 1508 MobiDBLite consensus disorder prediction 891 914 - -
Tpr4g0178 1508 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1260 1492 IPR003439 GO:0005524
Tpr4g0178 1508 SUPERFAMILY ABC transporter transmembrane region 309 613 IPR036640 GO:0005524|GO:0016021
Tpr4g0178 1508 Pfam ABC transporter transmembrane region 320 586 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr4g0178 1508 Pfam ABC transporter transmembrane region 940 1192 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr4g0178 1508 CDD ABC_6TM_ABCC_D2 938 1232 IPR044726 GO:0140359
Tpr4g0178 1508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 632 856 IPR027417 -
Tpr4g0178 1508 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 940 1220 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr4g0178 1508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1250 1487 IPR027417 -
Tpr4g0178 1508 SUPERFAMILY ABC transporter transmembrane region 938 1239 IPR036640 GO:0005524|GO:0016021
Tpr4g0178 1508 Gene3D ABC transporter type 1, transmembrane domain 901 1238 IPR036640 GO:0005524|GO:0016021
Tpr4g0178 1508 Gene3D ABC transporter type 1, transmembrane domain 298 616 IPR036640 GO:0005524|GO:0016021
Tpr4g0178 1508 ProSitePatterns ABC transporters family signature. 759 773 IPR017871 GO:0005524
Tpr4g0178 1508 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 634 857 IPR003439 GO:0005524
Tpr4g0178 1508 Gene3D - 617 879 IPR027417 -
Tpr4g0178 1508 Pfam ABC transporter 1276 1423 IPR003439 GO:0005524
Tpr4g0178 1508 Pfam ABC transporter 652 786 IPR003439 GO:0005524
Tpr4g0178 1508 SMART AAA_5 661 834 IPR003593 -
Tpr4g0178 1508 SMART AAA_5 1284 1476 IPR003593 -
Tpr4g0178 1508 CDD ABCC_MRP_domain2 1256 1476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0178 Tpr-Chr4 1964733 1971686 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0178 644 874 Calmodulin-binding Proteins AT2G36910 31.225 1.02e-23 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0178 - K05666 gmx:100777836 2421.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g0178 4 1964733 1971686 Tpr3g4032 3 44920793 44929241 PCT