Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0177 ATGTTGGAGTTGGGTTTTGTTTCAACTTCACTCATGAACAATGGAACTGATTTTCTTGTTAAACCCATTTTCCTTCATGGGTTATCTAGTTTACTTCATGTAGTGTTGCTTGTGGCTGTTTTAGTTTCATGGGTTTGGAGAAAAATCAAAACTTGTGTTGTGAATGAGTCTAAGGAGGAGAAACTTAATAGTACTTTGTTTAAAGTGACAAAGTTTTGCTCGATTGGTTTTTCTTTTTTAAATTTTGTTCTGTTTCTGTTTAATTATTTTTACTGGTATACTAATGGTTGGTCAGAAGAAAAAGTTGTTACCCTTTTTGATTTAGGTTTAAAAACAGTTTCTTGGTTTGTTATTTGTGTTTGTTTCCACAAAGGGTTCTTGTTTTTCTTCAGTTCAGGTCAAAGAAAAAGAAGGTTTCCATTCTTCTTTAGAGCTTGGTGTGTTTTCTATCTCATTGTTGCATGTTATTGTTTTGTGGTTGACATTGTTGTTTTGTATGAAAATCACATCGAGTTAACTGCTCAATGCTTGGTTTCTGATGTAGTTTCTTTTTGTGTTGGTTTGTTCTTCTGTTATGTGGGGTATTTTGTGAGAAATGAGAGTGAAGAAGGTGAGAGAACTATTCAAGAACCTCTTTTGAATGGTGATACACATGTTGGTAATGGTAATGTTAATCCCTTGGGGTTAAAAGAGACTAAAGGGAGTGACACTGTTACTCCTTTTTCAAATGCTGGAATTTTGAGCCTTCTCACTTTCACTTGGGTGGGACCCCTTATAGCATTTGGCAATAAGAAAACCTTAGACCTTGAGGATATTCCTCAGCTAGATAGTGGAGATAGTGTGGTTGGAGCTTTTCCATCTTTTAGAGACAAACTTGAAGCTGATTGTGGTGCAGTCAATAGAGTAACCACACTTAAGTTGGTTAAGTCATTGTTAATCTCTGTGTGGAAAGAGATTCTTATCACTGCTTTTCTTACATTTTTAAAAACTTTAGCATCTTATGTTGGTCCTTATCTTATTGATTCTTTTGTTCAATACCTTGATGGAAGAAGGCTATATGAGAATCAAGGCTATGTGTTGGTTTCTGCATTTTTCATTGCAAACATTGTAGAATTCTTAGCACGGAGGCATTGGTTATTTAGGTTGCAGCAAATCGGACTTCGATTCCGAGCACTGCTTGTCACTATGATATATAACAAAGCCTTAACACTTTCATGTCAATCAAGACAATGCCACACTTCTGGAGAAATAATCAATTTCATGACTGTTGATGCTGAAAGAGTCGGTGTTTTCAGTTGGTACATACATGATTTGTGGTTAGTAGTTATGCAAGTTACATTGGCGTTGTTAATTTTGTATAAAAATTTGGGGCTTGCTTCCATTGCTGCTTTTGTTACTACTATCATTGTTATGCTGGCAAATATTCCCCTGGGATCATTGCAAGAGAAGTTTCAAAATAAGTTGATGGAGTCAAAGGATACTAGAATGAAAACCACATCTGAAATTTTAAGGAGCATGAGGATCCTCAAACTACAAGGATGGGAAATGAAGTTTCTATCTAAAATAACTGAGCTTAGGGATGCCGAACAAGGGTGGTTGAGAAAGTTTCTTTATACTTCAGCCTTGACTACATTTGTCTTTTGGGGTGCACCTACATTGGTATCAGTGGTTACTTTTGGTACTTGTATGCTTATAGGGATCCCACTTGAATCGGGGAAGATTCTGTCAGCACTTGCAACAATCAGGATTCTTCAAAATCCTATTTATGATCTTCCAGATTTGATTTCAATGATAGCACAGACTAAAGTTTCTCTCGATAGGATCTCTTCGTTCCTTCGTCTCGATGACTTGCAATCTGATGTTGAAAAGCTTCCTCCGGGAAGTTCTGATACCGCCATTGAAGTGTTTGATGGGAATTTTTCCTGGGATTTATCTTCATCTAATCCAACTTTGCAGAACATAAATCTCAGAGTTTTTCAAGGCATGAAGGTTGCTGTTTGTGGTACAGTTGGATCAGGCAAGTCTACTTTACTTTCTTGTGTATTGGGAGAAGTACCAAAGATATCTGGTGTCCTTAAGGTTTGTGGAACAAAGGCTTATGTTGCTCAATCACCATGGATTCAAAGTGGCAAGATAGAGGATAATATATTGTTTGGTGAACACATGGTTAGGGAAAGGTACGAGAAGGTACTTGAAGCATGTTCCTTAAAGAAGGATCTGCAAATCTTGTCATTTGGTGATCAGACGGTTATCGGCGAACGTGGGATAAATTTGAGTGGTGGACAGAAACAAAGAATACAAATTGCTCGCGCTCTTTACCAAGATGCTGATATCTATCTATTTGATGATCCTTTTAGTGCTGTGGATGCTCATACAGGATCTCACCTTTTCAAGGAATGCTTGCTTGGCGTTTTAAGTTCCAAAACAGTTGTTTATGTTACTCATCAAGTGGAGTTCTTACCTACTGCTGACCTTATATTGGTCATGAAAGATGGAAAAATTACTCAAAGTGGAAAGTATGCCGATCTGCTCAACATTGGGACCGATTTTATGGAACTCATCGGCGCACACAGAGAAGCTATGTCTACACTTGAATCATTGGAGGGAGGAAAAACATCTAATGAAATAAGTACCTTAGAAAAAGCTGTAAATATCACCGGCGCTCATGAAGAGGTAAACAAAGATGAGCAAAATGGTGATAAAGGAGAACCAAAAGGCCAACTTGTTCAAGAAGAAGAAAGGGAGAAAGGTAAAGTCGGATTTTCAGTCTATTGGAAATATATCACAACTGCATATGGAGGAGCTCTTGTACCGTTCATATTATTGGCTCAGATTCTTTTTCAAGCTCTTCAAATTGGAAGCAACTATTGGATGGCTCGGGCAACTCCCATCTCAGCCGACGTGGAGGCACCGGTTGAAGGAACAACTCTAATTGAAGTCTATGTTGGTTTGGCCATTGGAAGTGTTTTATGCATTCTTGTTAGAGCATTGATACTTGTTACAGTCGGTTATAAGACAGCCACTATACTCTTCAATAAAATGCACTTGTGCATTTTTCGCGCCCCTATGTCATTTTTTGATTCGACTCCAAGTGGACGAATCCTTAATAGGGCTTCAACCGACCAAAGTGCAGTGGATACTGACATTCCTTATCAAATAGACTCATTTGCCTTCTACTTGATCCAGCTTCTAGGAATTATAATAGTGATGTCTCAGGTGGCATGGCAAGTTTTCATCGTGTGTGTACCCGTGATAGCAATTAGCATTTGGTATCAGCGATATTATTTACCATCAGCCCGTGAACTATCACGTTTAAGTGGAGTATGCAAAGCCCCAATCATTCAACACTTTGCCGAAACAATATCCGGTACTTTAACCATTAGAAGCTTTGATCAACAGTCAAGATTCCATGAAACAAATATGAAACTGACTGATGGGTATTCTCGGCCAAAGTTCAATAGCGCAGCTGCTATGGAATGGCTATGCTTTCGTTTAGATATGTTGTCTTCCTTCACATTTGCCTTTTCCTTGATATTCTTGATATCGATTCCACCCGGAATCATAAATCCAGGCATTGCTGGTCTAGTTGTTACCTATGGTCTAAATTTAAACACGATACAATCTTGGGTGATGCGGAATCTTTGTAATTTAGAGAACAATATTATATCGGTGGAAAGGATGCTTCAGTATACAACCATTCCTAGCGAGCCTCCGCTTGTTTCAGAAGAAGAAAAAAGGCCAGATCCTTCTTGGCCTGCATATGGCGAGGTTGATATACGAAACTTGCAGGTTCGATATGCTCCACATCTTCCGCTCGTGTTGCGTGGACTAACATGCACGTTTCATGGAGGATTAAAAACAGGGATTGTTGGTAGAACAGGTAGCGGCAAATCAACTCTTATACAAACACTTTTCCGACTTGTTGAACCTACTGCTGGGGAAGTTATCATCGACAGCATCAACATCTCTACAATTGGACTGCATGATATGAGGTCTAGACTAAGCATTATTCCACAGGATCCAACAATGTTTGAGGGGACTGTGAGAAGTAATCTTGACCCTCTGGAAGAGTACAATGATGAACAAATATGGGAGGCCTTGGATAAGTGTCAACTGGGAGATGAAGTTAGAAAGAAAGAAGGAAAGCTCGACTCTTCAGTTAACGAGAATGGTGAGAATTGGAGCATGGGTCAGAGGCAGTTGGTATGCCTTGGTAGGGTACTACTTAAGAAGAGCAAGATTTTGGTGCTTGATGAAGCCACTGCATCAGTTGATACAGCTACAGATAATTTAATTCAGCAAACTCTTAGGCAGCATTTCACCGACTCTACAGTCATTACCATTGCGCATCGAATAACTTCTGTTCTTGACAGTGATATGGTTCTACTTCTTAGTCAAGGACTTATTGAGGAGTATGACTCCCCAACCACATTGCCAGAGGATAAGTCATCATCTTTTGCTAATCTTGTTGCAGAGTATACCACGAGGTCCAGCTCCAATTTTGAGAAATCTGTTGATCACTGA 4524 0.3906 MLELGFVSTSLMNNGTDFLVKPIFLHGLSSLLHVVLLVAVLVSWVWRKIKTCVVNESKEEKLNSTLFKVTKFCSIGFSFLNFVLFLFNYFYWYTNGWSEEKVVTLFDLGLKTVSWFVICVCFHKGFLFFFSSGQRKRRFPFFFRAWCVFYLIVACYCFVVDIVVLYENHIELTAQCLVSDVVSFCVGLFFCYVGYFVRNESEEGERTIQEPLLNGDTHVGNGNVNPLGLKETKGSDTVTPFSNAGILSLLTFTWVGPLIAFGNKKTLDLEDIPQLDSGDSVVGAFPSFRDKLEADCGAVNRVTTLKLVKSLLISVWKEILITAFLTFLKTLASYVGPYLIDSFVQYLDGRRLYENQGYVLVSAFFIANIVEFLARRHWLFRLQQIGLRFRALLVTMIYNKALTLSCQSRQCHTSGEIINFMTVDAERVGVFSWYIHDLWLVVMQVTLALLILYKNLGLASIAAFVTTIIVMLANIPLGSLQEKFQNKLMESKDTRMKTTSEILRSMRILKLQGWEMKFLSKITELRDAEQGWLRKFLYTSALTTFVFWGAPTLVSVVTFGTCMLIGIPLESGKILSALATIRILQNPIYDLPDLISMIAQTKVSLDRISSFLRLDDLQSDVEKLPPGSSDTAIEVFDGNFSWDLSSSNPTLQNINLRVFQGMKVAVCGTVGSGKSTLLSCVLGEVPKISGVLKVCGTKAYVAQSPWIQSGKIEDNILFGEHMVRERYEKVLEACSLKKDLQILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGVLSSKTVVYVTHQVEFLPTADLILVMKDGKITQSGKYADLLNIGTDFMELIGAHREAMSTLESLEGGKTSNEISTLEKAVNITGAHEEVNKDEQNGDKGEPKGQLVQEEEREKGKVGFSVYWKYITTAYGGALVPFILLAQILFQALQIGSNYWMARATPISADVEAPVEGTTLIEVYVGLAIGSVLCILVRALILVTVGYKTATILFNKMHLCIFRAPMSFFDSTPSGRILNRASTDQSAVDTDIPYQIDSFAFYLIQLLGIIIVMSQVAWQVFIVCVPVIAISIWYQRYYLPSARELSRLSGVCKAPIIQHFAETISGTLTIRSFDQQSRFHETNMKLTDGYSRPKFNSAAAMEWLCFRLDMLSSFTFAFSLIFLISIPPGIINPGIAGLVVTYGLNLNTIQSWVMRNLCNLENNIISVERMLQYTTIPSEPPLVSEEEKRPDPSWPAYGEVDIRNLQVRYAPHLPLVLRGLTCTFHGGLKTGIVGRTGSGKSTLIQTLFRLVEPTAGEVIIDSINISTIGLHDMRSRLSIIPQDPTMFEGTVRSNLDPLEEYNDEQIWEALDKCQLGDEVRKKEGKLDSSVNENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNLIQQTLRQHFTDSTVITIAHRITSVLDSDMVLLLSQGLIEEYDSPTTLPEDKSSSFANLVAEYTTRSSSNFEKSVDH* 1508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0177 1507 CDD ABC_6TM_ABCC_D1 321 608 IPR044746 GO:0140359
Tpr4g0177 1507 CDD ABC_6TM_ABCC_D2 937 1231 IPR044726 GO:0140359
Tpr4g0177 1507 Pfam ABC transporter transmembrane region 939 1181 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr4g0177 1507 Pfam ABC transporter transmembrane region 320 587 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr4g0177 1507 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1259 1491 IPR003439 GO:0005524
Tpr4g0177 1507 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 633 856 IPR003439 GO:0005524
Tpr4g0177 1507 MobiDBLite consensus disorder prediction 889 913 - -
Tpr4g0177 1507 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 320 600 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr4g0177 1507 Pfam ABC transporter 651 785 IPR003439 GO:0005524
Tpr4g0177 1507 Pfam ABC transporter 1275 1422 IPR003439 GO:0005524
Tpr4g0177 1507 Gene3D - 1239 1493 IPR027417 -
Tpr4g0177 1507 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 111 1503 - -
Tpr4g0177 1507 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 111 1503 - -
Tpr4g0177 1507 SUPERFAMILY ABC transporter transmembrane region 309 613 IPR036640 GO:0005524|GO:0016021
Tpr4g0177 1507 Gene3D ABC transporter type 1, transmembrane domain 298 614 IPR036640 GO:0005524|GO:0016021
Tpr4g0177 1507 Gene3D ABC transporter type 1, transmembrane domain 900 1237 IPR036640 GO:0005524|GO:0016021
Tpr4g0177 1507 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1249 1482 IPR027417 -
Tpr4g0177 1507 SMART AAA_5 660 833 IPR003593 -
Tpr4g0177 1507 SMART AAA_5 1283 1475 IPR003593 -
Tpr4g0177 1507 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 630 855 IPR027417 -
Tpr4g0177 1507 CDD ABCC_MRP_domain2 1255 1475 - -
Tpr4g0177 1507 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 939 1219 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr4g0177 1507 CDD ABCC_MRP_domain1 633 833 - -
Tpr4g0177 1507 SUPERFAMILY ABC transporter transmembrane region 937 1238 IPR036640 GO:0005524|GO:0016021
Tpr4g0177 1507 ProSitePatterns ABC transporters family signature. 758 772 IPR017871 GO:0005524
Tpr4g0177 1507 Gene3D - 615 877 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0177 Tpr-Chr4 1945407 1952168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0177 608 873 Calmodulin-binding Proteins AT2G36910 29.010 1.13e-23 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0177 - K05666 gmx:100777836 2369.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g0177 4 1945407 1952168 Tpr3g3922 3 43716415 43724726 PCT