Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0158 ATGCAAAGAAGCAGAAACTTTTCAATGCAAACATCTTTTAAACATAAAATGTCATATGATTCTGACATGTTCAACATCGAGTCTGTACAAAACCTAGACTCATATTGCTTCGTGCAAAATGAGAATCTTGAAAACTACTCATCTTCTGATAACAGTAGCCACTCAAACTACCCTTCATTTCAAGGTTTAGACCAATATTCAAACTTTGACTCTTCTAACAATAGTCCAGTCTCAAAGCTACAATCAAACTCTTACGCATTCACATCGCCAAACTCTCTTGAAATTATCAATGATTTGTTAGAGAACGAACTTTGTTCGACACATACCCAAGATGACTTGTGGCACAAGACAAGAGAGCTTGAAAATGCTATGCTAGGACATGATGCAGCAGATATTCTAGACATATATAATGATATGGTAATGATTCCAGAAGAATCTGAATCTGATCCGCTTCTATTAGAGGCGGAAAAGTGGAAGAAAATGATGGAGATGATATCTAAAGGGGATTTGAAAGAAATGCTTTTCACTTGTGCAAAAGCAATATCAGAAAATGATATAGAAACAACAGAATGGTTAATGTCAGAGTTGTCGAAAATGGTTTCGGTTTCAGGCAATCCAATCCAAAGGTTAGGAGCATACATGTTGGAAGCTCTTGTTGCAAGAATAGCTTCTTCCGGAAGCATAATCTACAAATCATTGAGATGTAAAGAACCTAAACCTGCTACTAGTAAAGAACTCCTTTCGCACATGCACGTGCTTTACGAAATTTGTCCTTACCTCAAATTTGGATACATGTCAGCAAATGGAGTAATTGCCGAAGCTTTGAAGGATGAAAGTGAGGTTCATATAATAGATTTTCAGATTAATCAGGGAATTCAATGGATAAGTCTAATCCAAGCACTTGCTGGAAAACCTGGTGGACCACCAAAGATTAGAATAACCGGTTTCGATGATTCAACTTCAGCTTACGCTAGAGGAGGAGGGCTTGATATTGTAGGAGAAAGGTTATCAAAACATGCACAATCATGTAATGTAGAATTTGAGTTTCATGCTATAGGGGCTAATCCTACTGAGGTGAAACTCGAAGACCTTAAACTTCGTCGCAGTGAAGCTATTGCTGTGAATTTCGCTATGATGCTGCATCATGTACCAGATGAAAATGTACATGGTGGTCAAAATCATCGCGATCGGTTGGTGAGACTGGTGAAATGCTTGTGTCCTAAGGTAGTGACTCTTGTTGAGCAAGAATCGAATACCAATGAGCTTCCGTTCTTGCCACGTTTCGTTGAGACAATGAACTACTACTTGGCGGTTTTTGAATCAATTGATGTTTCTTTGCCAAGGGAGCACAGAGAAAGGATTAATGTAGAACAGCATTGTTTGGCTCGCGAAGTTGTTAACTTGGTAGCGTGCGAAGGTGCAGAAAGAGTCGAACGTCACGAAGTTCTGAAGAAGTGGAAATCATGTTTCACAATGGCTGGATTCACACCATATCCATTGAGCTCTTATATTAATTTTTCAATAAAGAATCTTCTAGAAAGTTACCAAGGACAATACACTCTAGAAGAGAAAGATGGTGCTCTTTATCTTGGTTGGATGAATCAAGCACTCATTACCTCTAGTGCTTGGAGGTGA 1635 0.3865 MQRSRNFSMQTSFKHKMSYDSDMFNIESVQNLDSYCFVQNENLENYSSSDNSSHSNYPSFQGLDQYSNFDSSNNSPVSKLQSNSYAFTSPNSLEIINDLLENELCSTHTQDDLWHKTRELENAMLGHDAADILDIYNDMVMIPEESESDPLLLEAEKWKKMMEMISKGDLKEMLFTCAKAISENDIETTEWLMSELSKMVSVSGNPIQRLGAYMLEALVARIASSGSIIYKSLRCKEPKPATSKELLSHMHVLYEICPYLKFGYMSANGVIAEALKDESEVHIIDFQINQGIQWISLIQALAGKPGGPPKIRITGFDDSTSAYARGGGLDIVGERLSKHAQSCNVEFEFHAIGANPTEVKLEDLKLRRSEAIAVNFAMMLHHVPDENVHGGQNHRDRLVRLVKCLCPKVVTLVEQESNTNELPFLPRFVETMNYYLAVFESIDVSLPREHRERINVEQHCLAREVVNLVACEGAERVERHEVLKKWKSCFTMAGFTPYPLSSYINFSIKNLLESYQGQYTLEEKDGALYLGWMNQALITSSAWR* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0158 544 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 25 543 IPR005202 -
Tpr4g0158 544 ProSiteProfiles GRAS family profile. 161 544 IPR005202 -
Tpr4g0158 544 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 25 543 - -
Tpr4g0158 544 Pfam GRAS domain family 170 544 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0158 Tpr-Chr4 1746269 1749627 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0158 9 544 GRAS Transcription Factor Family AT1G50600 55.678 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tpr4g0158 GRAS 6.4e-131 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0158 - - cam:101502619 851.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g0158 4 1746269 1749627 Tpr4g0158 4 1746269 1749627 ECH
Tpr3g4045 3 45027441 45030725 Tpr4g0158 4 1746269 1749627 PCT