Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0156 ATGGACACTGCCACCACAAACTCCGGCGAACCTCACTGTAGTTCTGAGCTCAGGCTCGACGGGGCACCCAATGATCCAAATCGAACTGGGTCGGGTCAAAATTCTATGGCAAGATACAAGCTGATGTCACCGGCGAAGCTTCCGATCTCGAGGTCGCCGTGTATTACAATTCCTCCGGGGTATAGTCCGACGTCGTTTTTGGAGTCCCCAGTTCTTCTTTCTAACATGAAGGTGGAGCCTTCACCGACTACAGGGTCCCTTCTTCAAGCTTTACATTGTTCTATGACTTCTGCTGGTTCTCCTACATTTCCTGTAACCTCTACATGCTTCAATACCAGCACTGTTAATGGCAGAAAATATAGTTTCTTTGAGTTTAAACCACCTGCTAGAAATATGGTTCCTGCAGACTTCAACAACCATGTAAGTGAACAATCTACTCAAGTAGAAGGTCAAGGAAAAGGTCAATCATTTCTGTCCTCGCCATTAAATGAAAATGAGAAAGCAGATCAATCTAATGAATTAAGCCTATCATCACCTGTTCAAATGGTTAGTTCTGTGGCTAATTCTCCCGTTGATGTCAACTCGGATGAACATAATCACAAAGGCAACACAGCTAATGGGCCTCAATCGTCAAATGACGGTTACAATTGGCGAAAGTATGGGCAAAAACATGTTAAAGGGAGTGAATTTCCACGTAGCTATTACAAATGTACGCATCCTAACTGTGAAGTGAAAAAACTTTTTGAACGCTCTCATGACGGCCAAATCACCGAGATAATTTATAAAGGAACACATGATCATCCTAAACCTCAACCGAGCAACCGATACTCTGCTGGTTCTATAATGTCTACGCAAGGAGAGAGATCCGATAACAGGGCATCTTCTTTGGCTGGCCGAGATGACAAAGTATCCAATAGTCCTGAGCAACCAACTGTTGCAACCAATGATCTTAGTCTAGAGGGTGCTGGATTTGTGTCGACCAAGACAAATGACGAGGTTGATGATGATGATCTTTTCTCAAAGCGAAGAAAAACGGAACTCGGAAACACTGACATCATTCCTGTAGTTAAGCCTATCCGAGAGCCCCGGGTTGTTGTACAGACTATGAGTGAAGTTGATATATTGGATGATGGATACCGCTGGCGTAAATATGGGCAAAAAGTGGTGAGAGGAAATCCTAACCCAAGGAGTTATTACAAATGCACAAATGCCGGGTGCCCGGTTAGGAAACACGTGGAGAGGGCATCACATGATCCGAAAGCTGTAATAACAACATATGAGGGCAAACACAATCACGATGTACCTGCTGCAAAGAATAGTAGCCATGACATGGCAGGATATGCAGCTTCAAAGATAAAGTTAGAAGAAAGCGATACTATTAGTCTTGACCTTGGGATGGGAATCACTTCTGCAGCTGAAAATAGATCGAACGGGCAAGGGAAAATGCTACTCTCCGAATTCGGGAACAACAGTCAAACTCACACAAGCAATTCCAATTTCAAGTTTGTCCATACCACCACAGGTCCAGTATACTATGGTGTTCTAACTAACGGTTCAAATCCGTTTGGTTCAAGAGAAAATAGAAACGATGGTTTGTCTATAAACCATTCCTCGTATCCTTACTCACAGAACATGGGAAGAATACTAATGGGACCATGA 1659 0.4346 MDTATTNSGEPHCSSELRLDGAPNDPNRTGSGQNSMARYKLMSPAKLPISRSPCITIPPGYSPTSFLESPVLLSNMKVEPSPTTGSLLQALHCSMTSAGSPTFPVTSTCFNTSTVNGRKYSFFEFKPPARNMVPADFNNHVSEQSTQVEGQGKGQSFLSSPLNENEKADQSNELSLSSPVQMVSSVANSPVDVNSDEHNHKGNTANGPQSSNDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPSNRYSAGSIMSTQGERSDNRASSLAGRDDKVSNSPEQPTVATNDLSLEGAGFVSTKTNDEVDDDDLFSKRRKTELGNTDIIPVVKPIREPRVVVQTMSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPAAKNSSHDMAGYAASKIKLEESDTISLDLGMGITSAAENRSNGQGKMLLSEFGNNSQTHTSNSNFKFVHTTTGPVYYGVLTNGSNPFGSRENRNDGLSINHSSYPYSQNMGRILMGP* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0156 552 SMART WRKY_cls 375 434 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr4g0156 552 SMART WRKY_cls 211 269 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr4g0156 552 SUPERFAMILY WRKY DNA-binding domain 210 270 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tpr4g0156 552 MobiDBLite consensus disorder prediction 143 183 - -
Tpr4g0156 552 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 29 532 - -
Tpr4g0156 552 MobiDBLite consensus disorder prediction 280 325 - -
Tpr4g0156 552 ProSiteProfiles WRKY domain profile. 212 270 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr4g0156 552 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 29 532 IPR044810 GO:0003700
Tpr4g0156 552 MobiDBLite consensus disorder prediction 280 326 - -
Tpr4g0156 552 ProSiteProfiles WRKY domain profile. 370 435 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr4g0156 552 SUPERFAMILY WRKY DNA-binding domain 367 435 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tpr4g0156 552 MobiDBLite consensus disorder prediction 1 36 - -
Tpr4g0156 552 Gene3D WRKY domain 360 436 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tpr4g0156 552 Gene3D WRKY domain 195 271 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tpr4g0156 552 Pfam WRKY DNA -binding domain 212 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr4g0156 552 Pfam WRKY DNA -binding domain 376 432 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0156 Tpr-Chr4 1736143 1740553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0156 42 552 WRKY Transcription Factor Family AT4G26640 55.019 3.75e-180 516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tpr4g0156 WRKY 1.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0156 - - gmx:100816583 857.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g0156 4 1736143 1740553 Tpr4g0156 4 1736143 1740553 ECH
Tpr3g4046 3 45032559 45039200 Tpr4g0156 4 1736143 1740553 PCT