Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0143 ATGGCAGTGGCAATGGAAACGGAGGGAGAGAATCATCACATAGTGAAAGCGTTGAACCTACTTCGAAGCAGAATCTGTGACACCGGATTCATCTTCAAGGATTCTTCAGATGGAAACTACAGCAAACTGAAATTCATGATATCAAGTTCAGTGGCGGAGGCTTGCAACAATTCTATTCTTCTCCTCGGTCCACGTGGCTCCGGGAAGCTTGCGGTTTTGGATCTTGTCATTCAAGATTTGTTACTTCAATATCCAGACTCCATTTCAGTGGTCAGACTGAGTGGGCTTTTGCATAGTGATGACATCTCTGCATTCAAGGAAATAGCTAGGCAGTTATGCATGGAGCATCAATTGCTATTCTCGAAAGCGGCATCATTTGATGACAATTCCCAATTTATGGTAGCCGTGTTAAAGGAATGCGGATTAGCACATAAAAGTGTAATTTTTATTTTGGATGAGTTTGACCTCTTTGCTCAGGGTAAACAGCGGCTACTATATAGCTTGCTAGATGCAATGCAATCTGTATCATCACAAGCTGTAGTAATAGGAATTAGTTGCCGCCTGGATGCAGATCAGCTATTGGAGAAAAGAGTACGATCTCGTTTTTCACACAGAAAGCTGTTGTTCTTACCACCTTCAATAGAAAATTCACAAAGATTACTGGCGCATATGCTGACATTACCATTAGAGTCGGGCCTTCCATATGATTACGCTGTTGAATTTAATAAAAGGGTTCAAAATATTATAGAAGACAAAAAGTTCAAAGAAATCTTCAATAAATATTTGAATTTTGACTCCTCTGTCAAACATTTGTTGAGGTTCCTATTCTACGCAGTCTCTCATATGGATTTGCAGACTGGGTTTCTGTCCCGGGAAAACTTTGAAACAGCATCTTCAAGCATCCAGAGACAGCCCAAACTGGAATGTTTAAGAAATTGCTCCATTTTAGAACTTTATATTTTGGTATGCATGAAGAGATTGGAAGTTAAAGAGAAAAGTTTATGTAACTTCAACGCAGTGATGAAAGAGTATAAAAGCGTTCATGATTCTTTCCAGACTTCTGATTACTATGCACGGAATGTCTGTTTAAGGGCATTTGAACATCTTATACATCGTGAATTAATATGTTTCTCAGACAATAGAGGACATAGTTTGTCTGTTGAATTTCGTCCTGTAAAGCTCTTAATTTCATCTGGTGAGCTGTATCAGGGATTAAAGGCATATCAGTCATGCCCCGCTATCCTTCAAAAGTTAATAGATTCGTGA 1266 0.391 MAVAMETEGENHHIVKALNLLRSRICDTGFIFKDSSDGNYSKLKFMISSSVAEACNNSILLLGPRGSGKLAVLDLVIQDLLLQYPDSISVVRLSGLLHSDDISAFKEIARQLCMEHQLLFSKAASFDDNSQFMVAVLKECGLAHKSVIFILDEFDLFAQGKQRLLYSLLDAMQSVSSQAVVIGISCRLDADQLLEKRVRSRFSHRKLLFLPPSIENSQRLLAHMLTLPLESGLPYDYAVEFNKRVQNIIEDKKFKEIFNKYLNFDSSVKHLLRFLFYAVSHMDLQTGFLSRENFETASSSIQRQPKLECLRNCSILELYILVCMKRLEVKEKSLCNFNAVMKEYKSVHDSFQTSDYYARNVCLRAFEHLIHRELICFSDNRGHSLSVEFRPVKLLISSGELYQGLKAYQSCPAILQKLIDS* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0143 421 Pfam ATPase family associated with various cellular activities (AAA) 59 205 IPR003959 GO:0005524|GO:0016887
Tpr4g0143 421 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 240 IPR027417 -
Tpr4g0143 421 PIRSF ORC4 1 421 IPR016527 GO:0000808|GO:0003677|GO:0005634|GO:0006260
Tpr4g0143 421 Gene3D - 37 211 IPR027417 -
Tpr4g0143 421 CDD AAA 57 205 - -
Tpr4g0143 421 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 4 12 421 IPR016527 GO:0000808|GO:0003677|GO:0005634|GO:0006260
Tpr4g0143 421 Pfam Origin recognition complex (ORC) subunit 4 C-terminus 220 403 IPR032705 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0143 Tpr-Chr4 1637840 1644781 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0143 9 420 Core DNA Replication Machinery Family AT2G01120 63.507 0.0 550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0143 K02606 - gmx:100800582 657.136