Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0112 ATGGTAACGGTGTACTTGAACATGTCAATGGCTTCTAATTCAGACCAATGGATGAAGGAATATAATGAAGCAATGAAACTTGCTGATGATATCAGCAGCATGATTTCTGAGTGGAGTTCAAATCCTGCATCTGGACCGGAAACCCAGCGGCAATCATCTGCTATAAGAAGGAAGATTACAATATTAGGGACTAGGCTTGATAGCTTGCAATCCCTTTTATCAAAGCTTCCTGCAAAGCCGCCTCTATCCGAGAAGGAGATGAATCGTCGCAAGGACATGCTTGCAAATTTGAGATCAAAAGTTAACGAAATGGCTTCTAAGCTGAACATGTCGAATTTTGCAAACAAGGATAGTTTGCTTGGTCCAGAAGTAAAACCAGATGTAATGAGTAGAACTGTTGGCCTAGACAACAATGGACTTGTTGGATTTCAACGACAAATTATTAAAGAACAAGATGAGAGCCTTGAGAGTTTGGAGAAGACTGTAATCAGCACGAAACACATTGCATTGGCAGTAAATGAAGAGTTGGATCTACACACAAGACTCATTGATGATTTAGACCAACATGTAGAAGTCACAGACTCTCGGCTTAGGCGGGTGCAAAAGAACTTGGCAGTATTAAATAAACGAACCAAAGGTAGTTGCTCTTGCTTCAACATGCTCTTATCAGTCATCGGTATTGTGTTTTTGGTTGTTATGATTTGGCTGTTGGTCAAATATTTGTAA 726 0.4008 MVTVYLNMSMASNSDQWMKEYNEAMKLADDISSMISEWSSNPASGPETQRQSSAIRRKITILGTRLDSLQSLLSKLPAKPPLSEKEMNRRKDMLANLRSKVNEMASKLNMSNFANKDSLLGPEVKPDVMSRTVGLDNNGLVGFQRQIIKEQDESLESLEKTVISTKHIALAVNEELDLHTRLIDDLDQHVEVTDSRLRRVQKNLAVLNKRTKGSCSCFNMLLSVIGIVFLVVMIWLLVKYL* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0112 241 SUPERFAMILY SNARE fusion complex 136 206 - -
Tpr4g0112 241 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 145 207 IPR000727 -
Tpr4g0112 241 CDD SNARE_Qc 148 205 - -
Tpr4g0112 241 PANTHER SYNTAXIN 10 234 IPR045242 -
Tpr4g0112 241 Pfam SNARE domain 182 232 IPR000727 -
Tpr4g0112 241 Gene3D - 147 209 - -
Tpr4g0112 241 SUPERFAMILY t-snare proteins 22 109 IPR010989 GO:0016020|GO:0016192
Tpr4g0112 241 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 10 234 - -
Tpr4g0112 241 SMART tSNARE_6 140 207 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0112 Tpr-Chr4 1357202 1360243 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0112 10 241 SNARE and Associated Proteins AT1G16240 69.099 3.10e-120 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0112 K08503 - gmx:100782666 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g0112 4 1357202 1360243 Tpr4g0112 4 1357202 1360243 ECH
Tpr3g4094 3 45469285 45472671 Tpr4g0112 4 1357202 1360243 PCT