Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0109 ATGTTCAATTTAGTATTGTTTATTAGTTGTTTTTATTTTGGTAGAGCCATAGATTGTGGAGGGAAGAAAATTGTAAATACCATCACTGTTGACCAACATAAAAAAGGAGCATTCCATACTATTCAAGCTGCCATTGATTCTATAAAGAAACCAAATGATCGATGGGTTATGATTAATATAGGTCCTGGCACATACAAGGAACAAATTTTTACAGATATTAGAATGTCGTGCATTATTTTAAAAGGATCAAGTAGACATAACACAATTATTACTCACAACAAATCATTTCACGATGGTGGCCAAACCATGAGTGCTACATTTCATTCTTCTCCACCTAATGTAATTTTGAGTGGCATTAAATTTCAGGTACGTAAAAGAAGTAACACATTTGGATATAATGGACCAGCAGTAGCAGCTTCTATACATGGTGATAAGACTGCAATTTTTGATTGTAGTTTCATTGGTTATCAAGATACTTTGCTTTCAGCAAAGGGGCGCCAATACTTTAAAAATTGTTATATTCAAGGCGAAGTTGACTTCATTTGTGGTGATGGTCAATCTTATTTTGAGAATTGTGTGATGAATGCCACTCAAGGAAAATCTAGACCTTCAGGTTTTGTGACAGCACAACGTAGGGATAACCCAAATGATCCAAGTGGATTTGTTTTTAGAGGAGGGTCAATTGTTGGAAATGGCAAGGTGAAACTTGGAAGACCTTGGAGACCTTACGCAAGAGTTATATTTTGGGGAACATATTTTTCTTCAGTGATTTCCCCTCGAGGATGGGATGTTTGGAATTCAAAGATAGCCCAAGTGAAAGAGACCACATTTGCAGAAATTAATTGTAGAGGACCGGGGGCCAATACTAAGAGACGTGTCAAGTGGGAGAAGAAACCAAAAGACTTAAATTTAAATAAATATACTTTGTCATCTTTCATAAATAATGATAGATGGCTTGACAATTTACCATCTATATAA 978 0.3538 MFNLVLFISCFYFGRAIDCGGKKIVNTITVDQHKKGAFHTIQAAIDSIKKPNDRWVMINIGPGTYKEQIFTDIRMSCIILKGSSRHNTIITHNKSFHDGGQTMSATFHSSPPNVILSGIKFQVRKRSNTFGYNGPAVAASIHGDKTAIFDCSFIGYQDTLLSAKGRQYFKNCYIQGEVDFICGDGQSYFENCVMNATQGKSRPSGFVTAQRRDNPNDPSGFVFRGGSIVGNGKVKLGRPWRPYARVIFWGTYFSSVISPRGWDVWNSKIAQVKETTFAEINCRGPGANTKRRVKWEKKPKDLNLNKYTLSSFINNDRWLDNLPSI* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0109 325 Gene3D - 21 323 IPR012334 -
Tpr4g0109 325 PANTHER PECTINESTERASE 2 325 - -
Tpr4g0109 325 SUPERFAMILY Pectin lyase-like 26 321 IPR011050 -
Tpr4g0109 325 Pfam Pectinesterase 28 315 IPR000070 GO:0030599|GO:0042545
Tpr4g0109 325 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 2 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0109 Tpr-Chr4 1333922 1336110 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0109 2 268 Carbohydrate Esterase AT2G19150 40.809 1.83e-58 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0109 - - mtr:MTR_5g088290 380.563