Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0108 ATGGAACCGACGACGGATCCGCCACCGGAGATTGAGAACGGAGGAAGAGAGGAACAACAACGGTGCAACAAGAAAGCGAAGGTTGATGTAATTGAGAATTCGGAATCGGTGGAATTGAAACGAGTGGCGGAGATTGTTTTGGTTTTATCAACGATGGCGACGATGCGTGGCGGAAAGAAACCGAGTGATGCCGAGGTTGAGCTTATGAGAGAGGCGAGGAATAAGCTTGCGGTTTTGTGTCAAGGGATTGCTCCGAAGGATATTGTTGCTGGTGAAGCTATTGGTTCTGTTATTCAGGATCTTGGTTTGAATGTTAAGGTTGAGGACCAAAGGTTAGGGTTTCGGTCCACACCTAAGATGTCTATTGCTGAACGGTACTCCTTTGCGAAAACAAAGATGGAGGAATCAAAGAAATTCTCTGCACCTTCTACAACATATACATCTCAGCCCTTGCAAACAAACACCAGTGGAATGGTTGACAATCGTGTGCCGACAAATGCTGTTCGAATGTTCGTGCCTGATAAATCAAACCACACGACAATATCATCCACAGTTTCCATGGTGTCTATTCCTCCCCATCTTTCTGCAGGATCTTCTGCAGCATTGCAGTATCAATCAACCAGCAATGAAGTTAGACCGCCCATGGTTTCTGGTGCAATACCTAACAATCACATGGGAAGAAATCCATCTTCTGTAGCATTGCCTAGAGTTGAAAACCCACAGTTTAAAGTTACTGGAGGAATGAGTGGGGCTCCTTATGTGCTTCAGGTCCAAGCAAACTCACTGGCAAACCAATCATCGGTGAATGCTCCTACATGGTCAATACAGACTCAACCTGTGTCATTAGCTAGAAATGTATCAGAAAACAAGGTGCCACCTGCTCATAACTCTGTCGTCAAGGTTGAGGGAACTGCTGGTGCAACCATATCAAGGGCAGGTCCACAAGTAACAACAGCCCAGAGCGTTAGACCATTTATTACTCACATGGGACCTGGAAATTTGTCTAGCATGCACCAGTCATTACAGGGTGGGAATATGGTTCAACCTCCTACGATTCCTAGTCACTCTGATATTGCAAAGGTTGTCCAGAAATTGTTACTACCGAAGGTTCCTGACCATCCCACATGGACTCCCCCATCAAGGGATTATATGAGTAAGACTTTCACATGTCAGACGTGTGAGCTCACTGTCAACGAGGTTGATACCGTTCTTATGTGTGATGCTTGTGAAAAGGGATTTCACTTGAAGTGCCTGCAGCCAGCAGTCATTAGGGGAATTCATAATAGAGTTGATTGGCACTGCATGAGGTGCTTGAGTTTAAGTGGGGGAAAGCCTTTGCCTCCAAAATATGGCCGTGTGATGAGATCCTCAATTACATCACCAAGTTTTCCCTCTAATACAGTGGGTATTCAACCATCTTCAGAGAAGAAAGCAGAGAACTTAGATTCAAAGGTCAGCCCACAGACATTTACAATAAATGGAAACTCTGTTCCAACTGTTTCCAGTGCCAATCACAATACTGAGCTGTCATTTGACTCAAATACCCCAGATACGAGAGATATACAAGGTTCCAACATTTCATCTAGCATTGAAACCATTGATGAGAAGCCTGATCCAAACATATGTATGAAATCTGCTGCTTGTAGGGCTTCCACTGGCTTGCAGGGTGAAAGTTATGTTGAACAAATAGATTCAAAGGCTTTGACCTGTAAAGATACTTCAGAATCTGAAACTCTTCCTAAATTATCTGAGCCGGCTAAATGTGAAAATTTGCATCCATCACGAGATTCTCAAGTTGAGATGACAGTGTCACACGACAGTGCTGAAATATCATCAGATAGACACGTTAGCAGTAGTTTGACGATTAGTGATAAAAAAGAATCTCATGGAGGAGAAAATATAACTTCTGATATCAACCACGGTGACCTAGATGTTGCACAACCAAATTCTGTCGGAGGTTCTGGAACTAATACTGAAGGTATTCAGCACTCTGCTTTATCTTCAGATAGCTCACATGCTGTAGAATGGATTGGTGATGTTGTACAACTTGTAGACGAGAAAAAGTATTATCAATCTTGCTGCATTGATGGAGTAACATATAGGCTGCAGGGTCATGCTTTTTTCACATCCAACCATGGCAAATTAACCCCTTCTAAACTTCAGTCTATGTGGGAAGATTCCAAAACTGGGGTGAAGTGGGTTAAGGCAACAAAGTGCTACTTCCCTGATGATTTGCCGGGGAATATCAGTCATCCTTGTATATCTGAAGTCAATGAGGTTTATGAATCTAATAGTGATAGAATAGAAATGGCTAGCTCTATCCGAGGCCCCTGTGTAGTCCTTCCATACGATAAATTTAAACAAGAAAATGACAGAAGATGTCAATTTGGAATTGAGGCAAGTGCTAGTGTACAGCCTATTTTCCTTTGCAGGTGGTTTTATGATGAAATCAAAAAGTCATTTCAACCTGTTATCAGTTGA 2481 0.4281 MEPTTDPPPEIENGGREEQQRCNKKAKVDVIENSESVELKRVAEIVLVLSTMATMRGGKKPSDAEVELMREARNKLAVLCQGIAPKDIVAGEAIGSVIQDLGLNVKVEDQRLGFRSTPKMSIAERYSFAKTKMEESKKFSAPSTTYTSQPLQTNTSGMVDNRVPTNAVRMFVPDKSNHTTISSTVSMVSIPPHLSAGSSAALQYQSTSNEVRPPMVSGAIPNNHMGRNPSSVALPRVENPQFKVTGGMSGAPYVLQVQANSLANQSSVNAPTWSIQTQPVSLARNVSENKVPPAHNSVVKVEGTAGATISRAGPQVTTAQSVRPFITHMGPGNLSSMHQSLQGGNMVQPPTIPSHSDIAKVVQKLLLPKVPDHPTWTPPSRDYMSKTFTCQTCELTVNEVDTVLMCDACEKGFHLKCLQPAVIRGIHNRVDWHCMRCLSLSGGKPLPPKYGRVMRSSITSPSFPSNTVGIQPSSEKKAENLDSKVSPQTFTINGNSVPTVSSANHNTELSFDSNTPDTRDIQGSNISSSIETIDEKPDPNICMKSAACRASTGLQGESYVEQIDSKALTCKDTSESETLPKLSEPAKCENLHPSRDSQVEMTVSHDSAEISSDRHVSSSLTISDKKESHGGENITSDINHGDLDVAQPNSVGGSGTNTEGIQHSALSSDSSHAVEWIGDVVQLVDEKKYYQSCCIDGVTYRLQGHAFFTSNHGKLTPSKLQSMWEDSKTGVKWVKATKCYFPDDLPGNISHPCISEVNEVYESNSDRIEMASSIRGPCVVLPYDKFKQENDRRCQFGIEASASVQPIFLCRWFYDEIKKSFQPVIS* 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0108 826 Pfam PHD-finger 390 438 IPR019787 -
Tpr4g0108 826 ProSitePatterns Zinc finger PHD-type signature. 390 437 IPR019786 -
Tpr4g0108 826 MobiDBLite consensus disorder prediction 462 476 - -
Tpr4g0108 826 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 11 825 - -
Tpr4g0108 826 MobiDBLite consensus disorder prediction 604 632 - -
Tpr4g0108 826 SUPERFAMILY FYVE/PHD zinc finger 381 445 IPR011011 -
Tpr4g0108 826 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 11 825 - -
Tpr4g0108 826 SMART PHD_3 389 438 IPR001965 -
Tpr4g0108 826 ProSiteProfiles Zinc finger PHD-type profile. 387 440 IPR019787 -
Tpr4g0108 826 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 336 438 IPR013083 -
Tpr4g0108 826 Gene3D - 677 825 IPR043151 -
Tpr4g0108 826 CDD BAH 697 824 - -
Tpr4g0108 826 ProSiteProfiles BAH domain profile. 698 825 IPR001025 GO:0003682
Tpr4g0108 826 MobiDBLite consensus disorder prediction 1 22 - -
Tpr4g0108 826 MobiDBLite consensus disorder prediction 462 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0108 Tpr-Chr4 1321940 1329723 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tpr4g0108 PHD 4.5e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0108 - - gmx:100807139 1185.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g0108 4 1321940 1329723 Tpr4g0108 4 1321940 1329723 ECH