Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0105 ATGGTGTCCACAAATTCTAACTCAACCGGAAAAAATGTCGAAATTGCTAGTGTTGGACTTCATGACCGGAATTCGAACCCCGGTCACTCCACTTTGTGTGTGCGAGTTTTAAATGACTTTGCGATTTCGTCAATACTTAGTCAACTATGTAACGTGATCATGCATGCCGGCAAACCATGTTTTATTCGAACCCCCTCTTACGTCGCTTTCACAGATTCTGGGCGCTTGATCGGGGAGGCCGCCAAGAGCCAGGTCACCAGGAACCCCACCAACACCATCTTCGAAGTGAAGCGTCTGATTGGAAGGAGATTCTCTGATGCTTCCGTTCAAAGTGACATGAAGCTATGGCCATTCAAGGTCATTTCTGGTCCTGGTGACAAGCCCATGATTGTTGTTAACTACAAGAATGAGGAGAAGCAGTTCGCTGCTGAGGAGATTTCTTCCATGGTCCTATGGAAGATGCGTAAGATATCTGAGGCTTATCTTGGTTCCACCGTGAAGGACGTTATTGTTACTGTCCCAGCATACTTCAACAACTCTCAGCGCCAAGCCACGAAGGATGCTGGACTCATTGCGGACCTTAATGTCATGCGTGTCATCAACGAACCCACCGCTGCTGTACTTGCCTATGGCCTTGACAAGAAGATCACCGATGATGAATGTAAGGTGTTGATTTTTGATCTTGGTGGTGGTACTTTTGATGTCTCTCTTTTAGTCATTGAAGCTTGTGTCTTTGAAGTTTTGGCCACTGCCGGAGACACCCATCTTGGAGGTGAAGACTTTGATAACATTGTCGTTAACCATTTTATTGAGGAATTCAAGAGGAAGCACAAGAAGGATATTAGTGGCAACCCAAGGGCTTTAAGAAGGTTGAGGGGTGAATGTGAAAAGGCAAAGAGGAGTCTCTCATCCACCACACAGACAACCATTGAGATTGACTCATTGTATGAAGGTGTTGACTTCTATACCACAATCACTCGTGACAAGTTTGAAGAGCTCAACATGGACCTTTTCATGAGGTGCATGGAGACTGTTGAGAAATGTTTGAGGGATGCAAACGTGGACAAGAAAAGTGTCAATGATGTTGTTCTTGTTGGTGGGTCTACTAGGATTCCCAAGGTGCAGTCATTATTGCAGGATTTTTTCGACGGGAAGGAGCTTTGCAATAGCATCAACCCTGACGAGGCTGTTGCTTATGGAGCTGCTATTCAGGCTGCTATCATGAGTGCTACCCATGAGAAGCTCGAGGAAATTTTGTTGTTGGATGTCAATTCCCTTTCACTTGGTTTGCAAACTGTTGGTGGAGTCATGACTACCCTCATTCCAAGGAACACTTCAATCCCAAACAAGAAGGAGAAAATTTTCTCAACCTCCGTGGACAACCAATCTGGTGTTCCTATCCGAGTGTACGAGGGTGAGAGAGGCATGACCAAGGACAATAACTTCTTGGGTACATTCACGCTTTATGACATTCCTCCTGCTCCAAGGGGTGTTCCTCAGATCAATGTTTGTTTTGAGATTGATGTTAATGGTATCTTAAATGTCTCGGCCGAGGACAAAACTACTGGGAAAAAGAACAAGATCACTATCACCAATGACAAAGGCAGACTTTCAAAGGAGGAGATTGAGAAGATGGTGCAGGAGGCGGATAAGTACAGGGTTGAGGATGAGGAGGAAAAGAAGAAGGCAGTTGCTAAGCATTCCATGGAGAAGATGGTGCAGGAGGAAGAAAAGCACAATTCTACCAAAGATACTCCAGATCAACACTTGGATGCACTAGAAGATACTTGTCATACTTTACCAACCCCAAGTTTACATTCCTTTCCTTCCGGAAACATTGGATATTATTTCAAATCTACAAAAGAGGCTTCACAAAAACTTATAGAAGCACTAAAGGATGATAAATGCTATGTACTTGGATTGTATGGAAATAGGGGCTCGGGTAAAACATCATTACTGAAGGCTATGATAGAAGAGTTTGAAAAGGTTTTTCATAAAGTTATATTTCTCTCCGTGTCTGAGAATCAAGACACCAAGAGCATTCAACATGAATTTGCTAAGATGTTGAACGTGTTTGAAAAACATGACACTGATGCTGTAAGAATCATGAAAATGAATTCGACACTAGAAAGGAAGGACAAAACTACTCTAGTTATCTTGGATGATTTTTCAACCAAGTCTCAACCACAAGAATTGGGCATTCCTTATAATAGCAAACAATGTAAGGTTCTTTTAACCACACGTGATGAAGCAGATTGTTCCCGCATGGGATGTAACCATTCAATTTCTCTGAATCCCTTATCTAATGATGAAGCTTTGACATTGCTACAAAAGATTTCTGGTGTTAACTCCCAATCTGGTCTATTTGAAGTGGCACAAAAAATTGCTTTTAAATGCAATGGCTTACCTGAATTGATTGAAAAGGTGTCGACTTCCTTGAAAAATAAATCCTTGGAATATTGGAAAGAATCATTAGTCAGTCTAAGCCACTCAACTGCCCGCTACCAGATTTTTATCAGTTTTAGAGGAGCCGATACTCGACATGTTTTTACAAACCACCTCCATTATGCTTTGTGCCAGAAGGGGTTCGTGACCTTCAAAGATGATGAATCATTGCAGGGTGGGGTCCCAATTGAGAAACTTCTTGACGACATTGAAGAATCGAGATTTGCAATTGTTATTTTATCCAAAAATTATGCAGACTCTGAATAG 2712 0.4226 MVSTNSNSTGKNVEIASVGLHDRNSNPGHSTLCVRVLNDFAISSILSQLCNVIMHAGKPCFIRTPSYVAFTDSGRLIGEAAKSQVTRNPTNTIFEVKRLIGRRFSDASVQSDMKLWPFKVISGPGDKPMIVVNYKNEEKQFAAEEISSMVLWKMRKISEAYLGSTVKDVIVTVPAYFNNSQRQATKDAGLIADLNVMRVINEPTAAVLAYGLDKKITDDECKVLIFDLGGGTFDVSLLVIEACVFEVLATAGDTHLGGEDFDNIVVNHFIEEFKRKHKKDISGNPRALRRLRGECEKAKRSLSSTTQTTIEIDSLYEGVDFYTTITRDKFEELNMDLFMRCMETVEKCLRDANVDKKSVNDVVLVGGSTRIPKVQSLLQDFFDGKELCNSINPDEAVAYGAAIQAAIMSATHEKLEEILLLDVNSLSLGLQTVGGVMTTLIPRNTSIPNKKEKIFSTSVDNQSGVPIRVYEGERGMTKDNNFLGTFTLYDIPPAPRGVPQINVCFEIDVNGILNVSAEDKTTGKKNKITITNDKGRLSKEEIEKMVQEADKYRVEDEEEKKKAVAKHSMEKMVQEEEKHNSTKDTPDQHLDALEDTCHTLPTPSLHSFPSGNIGYYFKSTKEASQKLIEALKDDKCYVLGLYGNRGSGKTSLLKAMIEEFEKVFHKVIFLSVSENQDTKSIQHEFAKMLNVFEKHDTDAVRIMKMNSTLERKDKTTLVILDDFSTKSQPQELGIPYNSKQCKVLLTTRDEADCSRMGCNHSISLNPLSNDEALTLLQKISGVNSQSGLFEVAQKIAFKCNGLPELIEKVSTSLKNKSLEYWKESLVSLSHSTARYQIFISFRGADTRHVFTNHLHYALCQKGFVTFKDDESLQGGVPIEKLLDDIEESRFAIVILSKNYADSE* 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0105 903 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 621 828 IPR027417 -
Tpr4g0105 903 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 413 570 IPR029047 -
Tpr4g0105 903 SUPERFAMILY Toll/Interleukin receptor TIR domain 828 903 IPR035897 -
Tpr4g0105 903 Pfam Hsp70 protein 64 599 IPR013126 GO:0005524|GO:0140662
Tpr4g0105 903 Pfam TIR domain 835 903 IPR000157 GO:0007165
Tpr4g0105 903 CDD AAA 641 747 - -
Tpr4g0105 903 ProSitePatterns Heat shock hsp70 proteins family signature 3. 362 376 IPR018181 -
Tpr4g0105 903 Gene3D - 64 405 - -
Tpr4g0105 903 Gene3D - 94 149 - -
Tpr4g0105 903 PANTHER HEAT SHOCK PROTEIN 70KDA 63 574 IPR013126 GO:0005524|GO:0140662
Tpr4g0105 903 SUPERFAMILY Actin-like ATPase domain 218 408 IPR043129 -
Tpr4g0105 903 Gene3D - 215 388 - -
Tpr4g0105 903 Gene3D - 604 762 IPR027417 -
Tpr4g0105 903 SUPERFAMILY Actin-like ATPase domain 63 214 IPR043129 -
Tpr4g0105 903 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 63 574 - -
Tpr4g0105 903 Gene3D Actin; Chain A, domain 4 257 340 - -
Tpr4g0105 903 ProSitePatterns Heat shock hsp70 proteins family signature 2. 225 238 IPR018181 -
Tpr4g0105 903 ProSiteProfiles TIR domain profile. 833 903 IPR000157 GO:0007165
Tpr4g0105 903 Coils Coil 542 562 - -
Tpr4g0105 903 Gene3D - 766 837 IPR042197 -
Tpr4g0105 903 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 406 588 IPR029047 -
Tpr4g0105 903 Pfam NB-ARC domain 623 833 IPR002182 GO:0043531
Tpr4g0105 903 PRINTS 70kDa heat shock protein signature 59 71 - -
Tpr4g0105 903 PRINTS 70kDa heat shock protein signature 81 89 - -
Tpr4g0105 903 PRINTS 70kDa heat shock protein signature 169 189 - -
Tpr4g0105 903 PRINTS 70kDa heat shock protein signature 231 241 - -
Tpr4g0105 903 PRINTS 70kDa heat shock protein signature 359 375 - -
Tpr4g0105 903 PRINTS 70kDa heat shock protein signature 391 411 - -
Tpr4g0105 903 PRINTS 70kDa heat shock protein signature 417 436 - -
Tpr4g0105 903 PRINTS 70kDa heat shock protein signature 498 514 - -
Tpr4g0105 903 Gene3D - 838 903 IPR035897 -
Tpr4g0105 903 Coils Coil 288 308 - -
Tpr4g0105 903 SMART AAA_5 635 767 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0105 Tpr-Chr4 1224304 1228914 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0105 64 570 Calmodulin-binding Proteins AT3G12580 77.603 0.0 819
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0105 K03283 - lja:Lj0g3v0120799.1 813.913