Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0086 ATGGCACCCTCACACATGCAAAACGGTGACTACTACAACACCACCGATGACGAAAACGACGTTGTTAACTACTACAACACCACCGATGACATAGAAGAAGAAACCGAGGCCAAAACCAACAACATTGTTTTCAATGGTTCTTCATCTTCACGTCGTTCATCATTTTCATTGAGTAGGGTAATACTTGACCCGAGAGGAAAATGGGTAGAAGTATGGAACCGGATTTTTCTTTTGGTATGTGCAACGGGTTTATTTGTGGATCCATTGTTTTTCTACACGTTGTCTATAAGTGACACGTGTATGTGTCTGTTTATTGACGGTTGGTTGCTAGTTACCGTCACCGTTATCCGTTGCATCACGGACGCGTTACATCTATGGAATATTTGGTTACAGTTTTATATTGAGAAACGCTCCTCTTTTGGATTTGTTCATCGTACTACTCGTCCTCGTACTTCTTCACATGTTTTTCCTTACTTCAAATTTAATAAGGGGGTTTTCTTTGATATCTTTGTCATCCTCCCTCTACCTCAGATTGTGTTATGGGTGACAATTCCGTCTATGTTAAAAGACGGATCAATTACGTGGGTGACGATTATATTGTTGACGATTTTCCTATTTCAATACCTCCCTAAAGTTTTTCACTCAGTCAACTTCCTGCGTCGCAAACTCGCAGCTGGTTATATTTTTGGAACCATTTGGTGGGGATTCGCTCTCAACATGATCGCTTATTTTGTCGCTTCCCATGTAAGCAGCAGGGCATGTTGGTATTTATTGGGACTTCAAAGGGGAATGAAGTGTCTAGGAGAGAAATGTGAGACAACAACAGGTTGTGGTTTGAGAACACTGTGCTGCAAAGAACCAATATACTATGGAAGCTATAGCATGATGAAGAAATTGGAGAAAACAAGGTTGATATGGGCACATAACAAGGATGCAAGGTTTACATGTTTAGATAGTGCTGACAACTATCAATATGGAGTTTATGAATTGAGTGTGCAACTTTTAGCAAATAATAGTCCAATCGAAAAGATACTCCTCCCTATCTTTTGGGGCTTAATGACTCTCAGCACTTTTGGGAACCTCCGGAGCTCAACAGAAAGGATGGAAACCGTTTTCAATATTATTATGTTGATCAGTGGCCTCCTTCTAGTCACTATGCTAATTGGAAACATGAAGGTATTTTTAAATGCTACAACATCGAAGAAGCGAGAGATGGAATTGAAGATGAAGAACATTGAATGGTGGATGAACAAAAGACGCTTGCCACAAGAGCTCCGACAACGTGTGCGTAACTACAAGAGACAATGTTGGACTGCAACGCGCGGAGTTGATGAATGTCAGTTAATCAAAAACCACCCCGAGGGTTTGCGAAGGGACATCAGGTACCATCTTCGTTTGGGTTTGGTGAGACAGGTGCCATTATTTCAGCATATGGATGAATTGGTGCTAGAGAACATTTGTGACCGTGTCAAGTCCCTTGTATTCACAAAAGGAGAAACACTAACAAGAGAGGGAGATCTGGTTCAAAGAATGCTATTTGTAGTAAGGGGTCATCTTCAAAGTAGCCAAGTCCTAAGAGATGGAGTAAAAAGTTGTTGCATGTTAGGGCCAGGAAACTTTAGTGGTGATGAACTTCTATCATGGTGTTTAAGAAGGCCATTTATACCGCGCCTTCCGACATCATCATCAACCTTGGTCACACTTGAAGCAACAGAGGTATTTGGACTTGAAGTTGAGGATGTCAAATATGTGACACACCATTTCAGGGACACATTTACAAACGAAAATGTTTGGAGAAGTGTTAGATATTACTCACCTGTTTGGAGAATCTGGGCTGCTGTGGCAATTCAGTTGGCTTGGAGAAGGTATAGACATAGATCGACTTTAACTTCTTTATCTTTTATTAGGCTTTGTAGACCTTTATCAAGGTCCAGATCTATGGAAGAGGTTAGACTTCATCTTTATACGGTCTTGTCAACCTTACCGAAGCCAAATCAAAGATGA 2004 0.4092 MAPSHMQNGDYYNTTDDENDVVNYYNTTDDIEEETEAKTNNIVFNGSSSSRRSSFSLSRVILDPRGKWVEVWNRIFLLVCATGLFVDPLFFYTLSISDTCMCLFIDGWLLVTVTVIRCITDALHLWNIWLQFYIEKRSSFGFVHRTTRPRTSSHVFPYFKFNKGVFFDIFVILPLPQIVLWVTIPSMLKDGSITWVTIILLTIFLFQYLPKVFHSVNFLRRKLAAGYIFGTIWWGFALNMIAYFVASHVSSRACWYLLGLQRGMKCLGEKCETTTGCGLRTLCCKEPIYYGSYSMMKKLEKTRLIWAHNKDARFTCLDSADNYQYGVYELSVQLLANNSPIEKILLPIFWGLMTLSTFGNLRSSTERMETVFNIIMLISGLLLVTMLIGNMKVFLNATTSKKREMELKMKNIEWWMNKRRLPQELRQRVRNYKRQCWTATRGVDECQLIKNHPEGLRRDIRYHLRLGLVRQVPLFQHMDELVLENICDRVKSLVFTKGETLTREGDLVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIPRLPTSSSTLVTLEATEVFGLEVEDVKYVTHHFRDTFTNENVWRSVRYYSPVWRIWAAVAIQLAWRRYRHRSTLTSLSFIRLCRPLSRSRSMEEVRLHLYTVLSTLPKPNQR* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0086 667 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 10 666 - -
Tpr4g0086 667 SUPERFAMILY Voltage-gated potassium channels 63 395 - -
Tpr4g0086 667 Gene3D Helix hairpin bin 399 464 - -
Tpr4g0086 667 Gene3D Jelly Rolls 472 590 IPR014710 -
Tpr4g0086 667 ProSiteProfiles cAMP/cGMP binding motif profile. 474 553 IPR000595 -
Tpr4g0086 667 SUPERFAMILY cAMP-binding domain-like 400 588 IPR018490 -
Tpr4g0086 667 CDD CAP_ED 474 580 IPR000595 -
Tpr4g0086 667 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 10 666 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0086 Tpr-Chr4 1045220 1051930 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0086 45 665 Ion Channels AT5G54250 68.312 0.0 866
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0086 K05391 - gmx:100800795 941.799