Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0063 ATGGCTTCCACTTACCGTGACCGTACGTCGGAGTTCCGATCACTGACGGAGACTCTAAAGAAGATCGGCGGCGGAGGAGGTGGAGCCACATCACCGCCTAATCAACAACCGTCTACCTCTCAAAATTCCTATTCAAGATCCGAATTCAACCGAAAAGCATCACAAATCGGATTCGGAATCCATGAAACTTCACAGAAAATCGCGAGACTCGCTAAGTTGGCGAAGCAATCGTCGATGTTTAATGATCCAATTATGGAAATTCAAGAACTAACTGCATTGATTAAGACTGATATAACAACGTTGAATTCGGCTGTTTTGGATTTGCAAAATATTCAGAAAATTGATTTGGCTGATGAGATTTACTCAGAAGATAGAGTTGTACATTCCAATGCTGTTTGTGATGACTTGAAGAACAAGCTCATGGGAGCTACAAAGCATCTTCAAGATGTTTTGACTACTAGGACAGAGAATATCAAGGCTCACGAGAATAGGAGGCAAATATTTTCTAAGAACCCTTTACAGCATCAACCAAAGTCAACTACTGAGCCGCCACCTTGGTCTAATTCAACAAATGCATTTGAAACTGAGAGTTTGCAACAAACATCAGGATTACCATCAAATGGAATTCCAGTTGGCAATCAGCTAAGACGAAGATTAGCTGTGGATAACACTCCATCCCAGCAAATGGAGATGTCTTTGGTACAGCAGGTTGTCCCTCGGCACGAAGAATATGCTCAAAATCGGGCATCTGCTCTGCACAATGTGGAATCTACTATTACCGAACTTAGTGGAATCTTCTCACATTTGGCTACAATGGTTGCCCATCAAGGAGAGCTAGCTATCAGGATTGATGACAATATGGATGAGTCATTGGCAAATGTTGAAGGAGCTCACAGTTCTTTATTGAGGCATCTCAACCGAATATCATCAAATAGGTGGCTTATGATAAAAATATTTGCCATTTTGATATTTTTTCTGTTGATCTTCATATTCTTTGTGGCCTAA 1005 0.4109 MASTYRDRTSEFRSLTETLKKIGGGGGGATSPPNQQPSTSQNSYSRSEFNRKASQIGFGIHETSQKIARLAKLAKQSSMFNDPIMEIQELTALIKTDITTLNSAVLDLQNIQKIDLADEIYSEDRVVHSNAVCDDLKNKLMGATKHLQDVLTTRTENIKAHENRRQIFSKNPLQHQPKSTTEPPPWSNSTNAFETESLQQTSGLPSNGIPVGNQLRRRLAVDNTPSQQMEMSLVQQVVPRHEEYAQNRASALHNVESTITELSGIFSHLATMVAHQGELAIRIDDNMDESLANVEGAHSSLLRHLNRISSNRWLMIKIFAILIFFLLIFIFFVA* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0063 334 PANTHER SYNTAXIN 4 333 IPR045242 -
Tpr4g0063 334 MobiDBLite consensus disorder prediction 29 48 - -
Tpr4g0063 334 Gene3D - 41 297 - -
Tpr4g0063 334 SMART tSNARE_6 237 304 IPR000727 -
Tpr4g0063 334 Pfam SNARE domain 279 330 IPR000727 -
Tpr4g0063 334 CDD SNARE_syntaxin5 245 317 - -
Tpr4g0063 334 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 242 304 IPR000727 -
Tpr4g0063 334 MobiDBLite consensus disorder prediction 19 48 - -
Tpr4g0063 334 MobiDBLite consensus disorder prediction 169 187 - -
Tpr4g0063 334 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 21 IPR021538 -
Tpr4g0063 334 ProSitePatterns Syntaxin / epimorphin family signature. 248 287 IPR006012 GO:0005484|GO:0006886|GO:0016020
Tpr4g0063 334 PANTHER SYNTAXIN-31 4 333 - -
Tpr4g0063 334 MobiDBLite consensus disorder prediction 161 187 - -
Tpr4g0063 334 SUPERFAMILY t-snare proteins 45 297 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0063 Tpr-Chr4 635080 640212 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0063 1 334 SNARE and Associated Proteins AT5G05760 60.870 1.65e-141 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0063 K08490 - gmx:100777383 478.018