Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0042 ATGATTTATGGTAGATGTGCAGCTTGCAAGAGTCAAAGAAGAAGGTGTCCATCTGATTGCATTTTCTCTCCTTATTTCCCTGCCAATGATCCTCAAAGATTTGCTTATGTTCACAAAATCTATGGTGGTAGCAATGTTGGAAAAATGCTTCAGCAATTACCTGAATATTTACGAGAACAAGCTGTAAATACTTTGTATTTAGAAGCACGATGTAGGATTCAAGATCCTGTTTATGGATGTGTTGGGATTGTCTCTAAATTGTATCAACAAATCCATGATACAGAAGCTGAGCTAGCCAAAATCCAAACTCAAATTGCTTATCATAAGCTCCAAAATCAACAAATTGAAGTTGAATCAAATTTCAATGCCTTGTCCACAGTTGATGCTGAAACAAATTTGAACTTTTTGCCAACACAAAGTAATAGCATGGAGCAGTTTCAGTGGCCTAATCAAGTTCCTAATTTGTTCAATTAA 474 0.3565 MIYGRCAACKSQRRRCPSDCIFSPYFPANDPQRFAYVHKIYGGSNVGKMLQQLPEYLREQAVNTLYLEARCRIQDPVYGCVGIVSKLYQQIHDTEAELAKIQTQIAYHKLQNQQIEVESNFNALSTVDAETNLNFLPTQSNSMEQFQWPNQVPNLFN* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0042 157 PANTHER LOB DOMAIN-CONTAINING PROTEIN 23-RELATED 1 116 - -
Tpr4g0042 157 Coils Coil 84 104 - -
Tpr4g0042 157 ProSiteProfiles LOB domain profile. 4 105 IPR004883 -
Tpr4g0042 157 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 116 - -
Tpr4g0042 157 Pfam Lateral organ boundaries (LOB) domain 5 102 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0042 Tpr-Chr4 423366 424318 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0042 5 121 AS2 family AT3G26620 59.829 3.50e-48 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr4g0042 LOB 4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0042 - - lang:109328513 244.588