Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0038 ATGGAGTTCTCTAGTAAACTCGATGATGCATTCGCTTTTCTTAAGCGAGTAGAAGTTTCATTTCAACGTAATAGGATCAAGTATGAAGTGTTTAGAGAAATTCTAAAAGATTACAAGGCTGGAAAAATTGATATAGGAGGTATGAAAGTAAGAGTGAAGGGATTATTTAAAGATCATAAAAAATTGATCTCGGAGTTCAATACCTTCTTGCCCAAGGAACATCAAATCACAGCTAAGTTCGAGTTTGAAGATGGATCCGCGTTTTATAAGGCAGTCAAAGACGCGTTTCAAGATAAGAGCGAAAATTTTGACGTTTTTTTAAATCTTATGATGGATTGGAAGTACGAAAGAGTTGATATAAGAAGTTTCGTGGCACAAATGAAGGAGTTGCTTAAAGAGCATACAGATTTAACTTTGGGATTCAATATCTTCCTGCCAACTAAATATCAAATCACAGTTCCATCTCAACCTGGTGTCTCCGAGACTATTGGTAATAAATTCAAAGGGGATGGTTCACATGTTCGCTGTTCAAATAACCATGAGTACTACGCTATTGTTTCAGAATGCAAAGATGATTTTAAGAAAAAAAGAAGCAAGCGATCAAAGAGACTAGATTTTAGCAGCATCCTAGAAGATGGTATCCTTGAATCAAAGAATCGCGATGATGTTGTTGTTTGCGGATACAATGAAGGTTTTGAGAAATTAACACCAAAGAAAAGAAGAATATCAAATACATCACATAGAGTTGAGTTTCAAATTCTTGATACTGATGAGACTTCTTCATCTGACGAGGGTTCCAAGAAGAAAATCACAAAAAGAGAAGTGAAGGATGAAAGATCAAACAAACCATCGAAGAAATGCAAGATCAACAACAATAATAATGATAACGACCAGCTACAAGAAGAGCGACCTGAGCTTCCATTGGTGTTTAAAGAAAAGATTGAACAGATGCAAGGTAGTGATGTGATGTTGGTGATCCAAAAGAAACTGACCAAGAGTGACGTGGAAGAAAACAACGGTCGCTTGTCTATCCCAGAAAACCAAGTAATTAACGAGAACTTTCTAGAACCAAATGAGAAATCATCCTTGGATTATGATCGTAATGAGGGACGCAAGAAGCGTATTGGTATGTCTGTGTCTGTGTTGGATCCAAGTCTTAATCTCTACAATGGTATGTGCTTCAAGAAGTGGAAAATGGGGAAATCTGAAATCTACAATATCACAGGCGAATGGAATAAACTTGTAGAAAACAACCATTTGGAAAAAGACCAAAAGGTGCAAGTCTGGTCTTTTCGAAGTCATCATCAGCTCTGCTTTGCACTCGTCAAGCTCTAG 1335 0.37 MEFSSKLDDAFAFLKRVEVSFQRNRIKYEVFREILKDYKAGKIDIGGMKVRVKGLFKDHKKLISEFNTFLPKEHQITAKFEFEDGSAFYKAVKDAFQDKSENFDVFLNLMMDWKYERVDIRSFVAQMKELLKEHTDLTLGFNIFLPTKYQITVPSQPGVSETIGNKFKGDGSHVRCSNNHEYYAIVSECKDDFKKKRSKRSKRLDFSSILEDGILESKNRDDVVVCGYNEGFEKLTPKKRRISNTSHRVEFQILDTDETSSSDEGSKKKITKREVKDERSNKPSKKCKINNNNNDNDQLQEERPELPLVFKEKIEQMQGSDVMLVIQKKLTKSDVEENNGRLSIPENQVINENFLEPNEKSSLDYDRNEGRKKRIGMSVSVLDPSLNLYNGMCFKKWKMGKSEIYNITGEWNKLVENNHLEKDQKVQVWSFRSHHQLCFALVKL* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0038 444 Gene3D - 310 444 IPR015300 -
Tpr4g0038 444 SUPERFAMILY PAH2 domain 77 147 IPR036600 GO:0006355
Tpr4g0038 444 Pfam Paired amphipathic helix repeat 27 70 IPR003822 GO:0006355
Tpr4g0038 444 Pfam Paired amphipathic helix repeat 103 145 IPR003822 GO:0006355
Tpr4g0038 444 ProSiteProfiles PAH domain profile. 3 73 IPR003822 GO:0006355
Tpr4g0038 444 Gene3D Paired amphipathic helix 84 146 IPR036600 GO:0006355
Tpr4g0038 444 Gene3D Paired amphipathic helix 9 71 IPR036600 GO:0006355
Tpr4g0038 444 PANTHER DOMAIN PROTEIN, PUTATIVE (DUF313)-RELATED 225 444 - -
Tpr4g0038 444 MobiDBLite consensus disorder prediction 253 285 - -
Tpr4g0038 444 MobiDBLite consensus disorder prediction 253 302 - -
Tpr4g0038 444 ProSiteProfiles PAH domain profile. 78 148 IPR003822 GO:0006355
Tpr4g0038 444 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 225 444 IPR005508 GO:0003677
Tpr4g0038 444 Pfam B3 domain-containing protein At2g31720-like 312 416 IPR005508 GO:0003677
Tpr4g0038 444 SUPERFAMILY DNA-binding pseudobarrel domain 324 442 IPR015300 -
Tpr4g0038 444 SUPERFAMILY PAH2 domain 6 73 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0038 Tpr-Chr4 389004 390560 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0038 9 77 WRKY Transcription Factor Family AT4G12020 44.928 1.66e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr4g0038 DUF313 2e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0038 - - mtr:MTR_5g092880 226.868