Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0035 ATGCCCTCAGCTCAAGATCCATTTTACGTTGTCAAAGAAGATATTCAAGATTCTATTGATAGGTTGCAATCTAATTTTCACCAATGGGAAAACACCTCTGATAGTGGGGAGTATTTGAACCTTTCAAAGGAAGTTCTTGCTGCTTGTGGAAGTATTGAGTGGCAGGTGGATGAATTGGACAAAGCAATTTCTGTAGCGTCTAGAGATCCTTCTTGGTATGGCATTGATGAAGTGGAGATTGAAAACCGGAGGAGGTGGACCAACAATGCTCGGACCCAGGTGCGCACCGTTAAGAAAACAGTGGAAGCTGGTAAGGGATCAAATACAGCAACTCATGCTAGTATAAATGGGATGCACAGGGAATTAATGAGGCTTCCAGATTCTCATCAAAGTACGTCCAAGTCTAACCAATATTCCGCTGGGGATAATGATGATTTCATAGAATCAGAATCAGATAGGCAAATGCTTCTTATAAAAAAGCAGGATGAGGAGTTAGATGAGCTTAGTTTAAGTGTACAAAGAATCGGAGGTGTTGGACTTACGATACATGAAGAGCTCCTCGGCCAGGAAAAAATTCTAGATGAACTTGGCAATGAGATGGATAGTACATCCAATCGTTTAGATTTTGTCCAAAAAAGAGTGGCGATGGTGATGAAGAAGACTAGTGCAAAGGGTCAGATCATGATGATATGTGGTTTGCTGGCCCTGTTCATTTTCCTTTTTATCTTGGTATTCTTCACCTAG 744 0.4126 MPSAQDPFYVVKEDIQDSIDRLQSNFHQWENTSDSGEYLNLSKEVLAACGSIEWQVDELDKAISVASRDPSWYGIDEVEIENRRRWTNNARTQVRTVKKTVEAGKGSNTATHASINGMHRELMRLPDSHQSTSKSNQYSAGDNDDFIESESDRQMLLIKKQDEELDELSLSVQRIGGVGLTIHEELLGQEKILDELGNEMDSTSNRLDFVQKRVAMVMKKTSAKGQIMMICGLLALFIFLFILVFFT* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0035 247 PANTHER SYNTAXIN PROTEIN 1 246 - -
Tpr4g0035 247 SUPERFAMILY t-snare proteins 5 101 IPR010989 GO:0016020|GO:0016192
Tpr4g0035 247 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 155 217 IPR000727 -
Tpr4g0035 247 Coils Coil 12 32 - -
Tpr4g0035 247 SUPERFAMILY SNARE fusion complex 153 217 - -
Tpr4g0035 247 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Tpr4g0035 247 Gene3D - 162 226 - -
Tpr4g0035 247 CDD SNARE_Qc 158 215 - -
Tpr4g0035 247 Gene3D - 2 104 - -
Tpr4g0035 247 Pfam SNARE domain 192 243 IPR000727 -
Tpr4g0035 247 Coils Coil 193 213 - -
Tpr4g0035 247 PANTHER SYNTAXIN 1 246 IPR045242 -
Tpr4g0035 247 SMART tSNARE_6 150 217 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0035 Tpr-Chr4 372585 377083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0035 55 247 SNARE and Associated Proteins AT1G28490 69.430 6.33e-94 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0035 K08500 - gmx:100793612 381.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4158 3 46159690 46162835 Tpr4g0035 4 372585 377083 PCT