Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0033 ATGGTTGATATTCAGATCCCAAGCACGTTCGATCCATTTGCAGAGGCTAAAGAATCGGATGCACCGGGTACAAAAGAGTACGTGCATATTCGCATACAACAAAGGAATGGAAAGAAGAGCTTAACGACGGTGCAAGGGCTGAAAAAGGAGTTTAGCTATGAGAAGATCTTAAAAGATCTCAAGAAAGAGTTTTGTTGCAATGGAAATGTTGTGAATTGTAAGGATCTTGGCAAGATTATTCAACTTCAAGGCGATCAGCGCAAGAATGTTTCTCACTTTCTTGTTCATGCTAATCTTGTCAGAAAGGACAGCATCAAGATTCATGGTTTTTAA 333 0.3964 MVDIQIPSTFDPFAEAKESDAPGTKEYVHIRIQQRNGKKSLTTVQGLKKEFSYEKILKDLKKEFCCNGNVVNCKDLGKIIQLQGDQRKNVSHFLVHANLVRKDSIKIHGF* 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0033 110 CDD eIF1_SUI1 26 109 IPR005874 GO:0003743
Tpr4g0033 110 Pfam Translation initiation factor SUI1 25 96 IPR001950 GO:0003743|GO:0006413
Tpr4g0033 110 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 2 110 - -
Tpr4g0033 110 PANTHER PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG 2 110 - -
Tpr4g0033 110 TIGRFAM SUI1_MOF2: translation initiation factor SUI1 3 110 IPR005874 GO:0003743
Tpr4g0033 110 Gene3D - 1 110 - -
Tpr4g0033 110 SUPERFAMILY eIF1-like 2 110 IPR036877 GO:0003743|GO:0006413
Tpr4g0033 110 PIRSF Transl_init_SUI1_Euk 1 110 IPR005874 GO:0003743
Tpr4g0033 110 ProSiteProfiles Translation initiation factor SUI1 family profile. 28 98 IPR001950 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0033 Tpr-Chr4 368383 369367 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0033 2 110 Eukaryotic Initiation Factors Gene Family AT5G54940 79.817 8.08e-63 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0033 K03113 - gmx:100499676 198.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g0033 4 368383 369367 Tpr4g0033 4 368383 369367 ECH
Tpr3g4161 3 46240640 46242173 Tpr4g0033 4 368383 369367 PCT