Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0032 ATGGCTAATACCATCACTTCACCAACTATGACTAAGTGGTTTTGTGGAACAATAGAAGCAATAAATAATTGTAAGGGAGCCCTTTGTTTAAGGGTGTTGAGTGTCATTGGTTGTTCTGCATTTGAGAAATTCATGAAAGTTATGGAGAGAATTCTTTTTGCTGCATTTACTTGTATTCTAGCATTAGGAGGGTCAATAATAGGAACAATAGCAGGAGCTATCAAAGGACAGACAAGAGAATCTGGTTTTCTTGATGGAGCTGGAAAAGGAGCAATTGCAGGAGCTATTGCAGCCATAGAATTGATGAGTTTTGATTCTCTTGAGCCATTTTCCAAGGTTGCTTTGTTGAGAAGTTTATTAAATGGGAAAGTGTTTATGGATTGCATATGTCCAATTGTTGCACAAGCTTATCTATTTTATATCAATTCACTAGAAACAACTTATGGAGGACTGTTTTCAGATATTTATGACAACATGGGAGTTAAGGGTATGTCCCAAAGTTGTATTATGAAGCTTCCATTTCAACAATTTAGCTCCAACAAAATGATGAAATTATACAATGAATCTTGCTGCTCAATTTGCTTCCAGGATTTTGAGGATGGAGAATTGGTTAGAATACTTCCAAAATGTTGCCACATTTTTCATTTAGAATGCATTGACAAGTGGTTTGTCCAACAAGGATCATGTCCTATTTGTAGAACTTATGTGCATGACCACATTCATGAATAG 729 0.358 MANTITSPTMTKWFCGTIEAINNCKGALCLRVLSVIGCSAFEKFMKVMERILFAAFTCILALGGSIIGTIAGAIKGQTRESGFLDGAGKGAIAGAIAAIELMSFDSLEPFSKVALLRSLLNGKVFMDCICPIVAQAYLFYINSLETTYGGLFSDIYDNMGVKGMSQSCIMKLPFQQFSSNKMMKLYNESCCSICFQDFEDGELVRILPKCCHIFHLECIDKWFVQQGSCPICRTYVHDHIHE* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0032 242 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 19 236 - -
Tpr4g0032 242 CDD RING-H2_PA-TM-RING 190 233 - -
Tpr4g0032 242 SMART ring_2 191 232 IPR001841 -
Tpr4g0032 242 Pfam Ring finger domain 191 233 IPR001841 -
Tpr4g0032 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 238 IPR013083 -
Tpr4g0032 242 SUPERFAMILY RING/U-box 184 238 - -
Tpr4g0032 242 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 19 236 IPR044523 -
Tpr4g0032 242 ProSiteProfiles Zinc finger RING-type profile. 191 233 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0032 Tpr-Chr4 346385 348604 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0032 47 236 C3H Transcription Factor Family AT5G66070 34.000 2.55e-34 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0032 - K19041 gmx:100305612 264.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g0032 4 346385 348604 Tpr4g0032 4 346385 348604 ECH