Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0008 ATGCAATTTCAATTTTCATTCAATTGGGAAATAACGGTGACAACCTCAATGGCTAGTGGTAGAAATGTTCTGAATTTTCCAAGGGAATACTCCAGAAATTGTTTATCAAACTCTGAATCTACCATTCATCTTTTGGATATTGCTACTGGAAAAGTGTTTAAGTCTCCAATCATTACGTCCACCAAAAATAATGAAGACAAGTATGTTTATTCTTGCTGGAAGAAGTTTGTGAAAGAAAACAAATTGAAGTTCAAAGATAGGGTTATTTTCAATGCTCCGGATGGCAACAATGTGTTACAAGTTCAAATTTTACGTAGAAGTCACCCACGTTAG 333 0.3453 MQFQFSFNWEITVTTSMASGRNVLNFPREYSRNCLSNSESTIHLLDIATGKVFKSPIITSTKNNEDKYVYSCWKKFVKENKLKFKDRVIFNAPDGNNVLQVQILRRSHPR* 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0008 110 Gene3D - 4 108 IPR015300 -
Tpr4g0008 110 ProSiteProfiles B3 DNA-binding domain profile. 9 107 IPR003340 GO:0003677
Tpr4g0008 110 SMART B3_2 12 107 IPR003340 GO:0003677
Tpr4g0008 110 SUPERFAMILY DNA-binding pseudobarrel domain 9 108 IPR015300 -
Tpr4g0008 110 Pfam B3 DNA binding domain 10 106 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0008 Tpr-Chr4 89521 90177 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr4g0008 B3 1.1e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0008 - K23852 mtr:MTR_6g087720 51.2174