Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0006 ATGGCATACATGAAACGCCTTGTTATTGAACTCAGCAAACCTGATCTCAGAGAAAATGCTATTCGTGTGCTCTCCAAGTTATTTCATGAACTTGCACCTTTATTGTGGAATTCTGTTGGTACTATTGAAGTACTTTTACAGGAAATAACTTCCATATATCCTAATCTTTCACCGCCAACTCTTTCTCATGCACAATCAACTCGAGTGTGCAATGTTATTGCACTACTTCGGTGTCTGGCATCTCACCCTGATACAATGTCACTCATCATGGCTATGATACCTATGTATCTGTACCCTTTCCTTCAAACGACAAATACCTTACCCCAATTTGACTGGTTGAGGCTTGCGAGTCTTGGAGTCATTGGTGTCTTGGTAAAGGCCAGAAGCAAAGAAGTTATACCTTTTCTTCTTTCAAATGAAATTATTCCATTGTGTTTGCATAGCATGGAAATTGGCAACGAATTGTCAAAATCAGCTGCAACTTTCATCCTACAAAAAATTTTGATGGATGAAGATGGTTTAGCTTATGTGTGTGCCACGGCACACCGCTTCTTTGCTGTAAGTCGAATTTTGGACATGGTGATGGAATATGTTCAGAGACAACCTTCATCTCGGCTTTTGAAGCTTATAATTCCATGTTATTCTCGCTTGTCTGAAAATCGCGGTAGGGCTGGAATTGCATTAACAAGCTCTCTTCCGGGTGTGTTTGCAAACCCCGCTTTCATTAATTCCCTTCGTGAAGATCCAACAACTTGGAGGTGGGCAGAGCAATTGTATGAAAATATTAGGAAGAATCGTTTTCAGTCAGATCGAATGTATGATATTGTGTGGTCCACATCATCATCAGGATATGTGTCGTTTGTAGCTCCTCTCCATGTTTCTTCTCAATCTAGCTCCGCTATCGATTGGACGGCGTACATGGAACGCCTTGTTATTGAACTCAGCAAACCTGATCTTAGAGAAAATGCTATTCGTGTGCTCTCCAAGTTATTTCATGAACTTGCACCTTTGTTGTGGAATTCTGTTGGTACTATTGCAGTACTTTTACAGGAAATAATTTCAATATATCCTAATCTTTCACCACCAACTCTTTCTCCAACACAATCAACTCGAGTGTGCAATGTTCTTTGTGTGGCATCTCACCCCAATACAAGGATGTCACTCATCATAGCTTGCATACCTCAGTATGTGTACCCTTTCCTTGAAACGACAAATATCTTACCACAGTTTGACTATTTGAGGGTTGCGAGTCTTGGAGTCATCGGTGCCTTAGTGAAGGCTAATAGCAAAGAAGTTATACTTTTTCTTCTTTCAACTGAGATCATTCCATTATGCTTGCGCAGCATGGAAATTGGCAAAGAATTGTCAAAAAATGTTGCGACATTCATTCTTCAAAAAATTTTGCTGGATGATGATGGTTTAGCTTATGTATGTGCAACAACAGACCGATTTTTTGCTGTACGTCGAATTTTGGACATGGTGTTGGAAAGTCATGAGAGGCAACCTTCAACTCAGCTTTTGAAGCTTATAATTCCATGTTATTCTCGTTTGTCTCAAAATCGCAGGGCTGGAATTGCATTAACAAGCTCTCTTCCGGTTGTGTTTGCAAACCCCGCTTTCATTAACTCCCTTCGTGAAGATCCAACAACTTGGAGGTGGATGGAGCAATTGTATGAAAATATTAGGAAGAATCATGTTCAGTCAGCACGAACTGAAGTACAAATGGATGATATTGTGGATAAATTATGTGTTTGA 1755 0.4 MAYMKRLVIELSKPDLRENAIRVLSKLFHELAPLLWNSVGTIEVLLQEITSIYPNLSPPTLSHAQSTRVCNVIALLRCLASHPDTMSLIMAMIPMYLYPFLQTTNTLPQFDWLRLASLGVIGVLVKARSKEVIPFLLSNEIIPLCLHSMEIGNELSKSAATFILQKILMDEDGLAYVCATAHRFFAVSRILDMVMEYVQRQPSSRLLKLIIPCYSRLSENRGRAGIALTSSLPGVFANPAFINSLREDPTTWRWAEQLYENIRKNRFQSDRMYDIVWSTSSSGYVSFVAPLHVSSQSSSAIDWTAYMERLVIELSKPDLRENAIRVLSKLFHELAPLLWNSVGTIAVLLQEIISIYPNLSPPTLSPTQSTRVCNVLCVASHPNTRMSLIIACIPQYVYPFLETTNILPQFDYLRVASLGVIGALVKANSKEVILFLLSTEIIPLCLRSMEIGKELSKNVATFILQKILLDDDGLAYVCATTDRFFAVRRILDMVLESHERQPSTQLLKLIIPCYSRLSQNRRAGIALTSSLPVVFANPAFINSLREDPTTWRWMEQLYENIRKNHVQSARTEVQMDDIVDKLCV* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0006 584 Gene3D - 302 563 IPR011989 -
Tpr4g0006 584 Gene3D - 1 264 IPR011989 -
Tpr4g0006 584 Pfam Cell differentiation family, Rcd1-like 310 561 - -
Tpr4g0006 584 Pfam Cell differentiation family, Rcd1-like 7 262 - -
Tpr4g0006 584 PANTHER CELL DIFFERENTIATION, RCD1-LIKE PROTEIN 293 562 - -
Tpr4g0006 584 PANTHER CELL DIFFERENTIATION, RCD1-LIKE PROTEIN 1 263 - -
Tpr4g0006 584 PANTHER UNCHARACTERIZED 293 562 - -
Tpr4g0006 584 PANTHER UNCHARACTERIZED 1 263 - -
Tpr4g0006 584 SUPERFAMILY ARM repeat 13 479 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0006 Tpr-Chr4 63269 73016 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Tpr4g0006 Rcd1 1.1e-89 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0006 K12606 - cit:102618037 312.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4131 3 45865398 45872216 Tpr4g0006 4 63269 73016 PCT