Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0005 ATGACTTATATAACTAGTTTTAGCAGTAGAATTGTTACATTCTTGTTGTTGACTACTCTTACCTCTGATGGTTTGACTCTGTTGTCACTCTTGACACACTGGACTTCTGTTCCTACCCTCATCAGGTCTAGCTGGAAGGCATCTGATTCGAATCCATGCTCATGGTTTGGTATTCAATGTGACCATGCCCAAAATGTCATTTCCATTAACCTAACTGGTCTTGGGATTTCTGGTCAAATTGGACATGAAATTGGAAACCTTTATCATTTGCAGACCCTTGTTTTGTTAGGTAATAGTTTCTCAGGGACTATTCCTTCATCTCTTGGTAATTGCAGCAAACTAGAGCACCTTGAATTGTCTTCCAACCATTTGAGAGGCGAAATTCCGATAAGTATTTGGAGAATACCAAGTCTTGTGAACATCTTGGTTCACAACAACAACCTCTCTGGGGAACTACCTTTCGAGATGACAAAGCTCAAGTATCTAAAAAATATCTCATTGTTTGATAATCAGTTCTCAGGAGTCATACCTCAAAGCTTGGGAATCAACAGTAGCATAGTAAAGTTGGACTGTACGAATAACAAGTTCAGTGGTAATATCCCGCCAAATCTTTGCTTTGGAAAGAATTTGAGTGAGCTCAATATGGGAAGCAATCAACTTCAAGGCGTCGTACCTTCTGATATAGGAAAATGTGAAACTCTAAGGAGGTTGTTTGTCGGTGATAATAATTTCACCGGATCTCTTCCTAAATTTGAAAGTAATCTGAACCTGAAATACATTGATATCAGCAAGAACAATATGGGTGGATCAATTCCATCAAGTTTGGGAAATTGCACAAATCTCACATATATTAATTTGTCATGGAACAAATTTGCCGGACTCGTACCATCAGAGCTTGGAAACCTTGTGAATCTTGTGATTTTGGATCTTTCTCACAACAACTTGCAAGGTTCTTTGCCACTTGAGCTGTCAAATTGTACTAAAATGGATCGTTTTGATGTGGGATTCAATTTCCTAAATGGCTCACTCCCTTCAAGTTTGAGAAGTTGGACAAATATAACCACATTGGTATTAAGTGAAAATCACTTCACAGGAGGTATCCCAGCGTTTTTGGCAGCACTTGGTAACCTTCGCGAGTTACAACTTGGTGGAAATTTGTTTGGAGGCACAATTCCTTCATGGATAGGAACATTGGATAATCTGTTCTATGGATTGAATCTGAGTGCTAATGGATTGATAGGTGATATTCCTTTTGAAATTAGGAAGCTAGAACTGCTGCAAAGTCTGGACATATCCTTGAACAATTTAACAGGAAGTATACATGCTCTTGGAGGTCTTGTTTCATTAACGGAGATCAATATTTCTTACAATTTCTTCACTGGTTCTGTACCAGAAACAATAATTCTCCAAAAGCTATTGAATTCCTCGCCTTCATCATTCATAGGTAATCCTCTCCTATGTGTTATATTTGGTTGCATTCACACTAATTCTTATTCGAAAGAACAACCTGTTTATGAGGGTTCTCACAAAGTTAGTAAAGTTCGAATAATTGTGCTGATGGAACTTGGACCCTCAATATTTATTTCTGCCATCTTGGTAATAATAATTCGAATTTATTGCATTAGAAAGGAATCAAGAAGGGCCTCTGATCTTCAGCTAATGTTTTTTAATGTAAGAGGAGAAGAAAGTTTTGAATTCACAAACGACAGTGATTACGAATTAAAGATCTCAACTGAAAAGGAGATGTCTTCCCTTCAAGAGCAAGTGCTGGAGGCCACAGAGAACTTAAAAGATGACTATATTATTGGAAGAGGAGCACATGGTATTGTGTACAAAGCCATAATAGGTCGACAAGTTTGTGCTGTAAAGAAGCTTGAATTTGGACGCAACAAGCAAAAGCGGTTACTTATCACGCGCAACGAAATTAAAGTCCTTAGGATCATTAAGCATCCAAATTTGATCAAATATGTTGACTACTGGATTGGAAAGGACTATGGTTTAGTCTTGTATGAATTCATGGAAAATGGAAGTCTTTATGAAATTTTGCATGAAAAGAAACCCGCCCCCTTAACATGGAATGTTCGGTGTAAGACAGCAGTTGGAATTGCTCAAGGACTAGCTTATCTTCATTATGATTGTATTCCACCAATAGTGCACCGAGACATCAAACCAAAGAATATACTTCTTGACAATAATATGGAGGCTGTTATAGCTGATTTTGGTACTGCCCTGTGCAAGAAGCTGTTTGAGGATTCTAATAGTCATTCTGAAACAAGGAAAATGCTTTCGTCACACGTTGTAGGTACCCCTGGCTATATTGCACCGGAGAATGCATATGATATAGTGCCTGGAAGAAAGTCTGATGTATATAGCTATGGAGTTGTCTTGCTCGAGCTAATAACCCGAAAGAAATTATTAGTTCCGTCTATAAATGATGAGGCGAACGAGATCCACATAGTGACCTGGGCTAGATCTGTAATGATGGAAACAGGCATGATTGAGAACATTGTTGATCCATACCTTGCAAGTGCATTTCCCAATTCAATAGCACTAACCATGCAAGTCACTGCAGTGCTTTCATTGGCATTACAATGCACAGAGAAGGATCCACAAAAGAGGCCGACCATGAAAGGTGTTATTGACTTTTATAATAAGAACTTGTTTAATCTGAGATGTGATGAGGTTCAATATGGTGCTGATGGACTTGTAATTAAATTGATGGGAAATGGTAAGATTCGGTATGAAATTGTTGTCGGCATTGCGAATCTAGTTGTTCCAAAAATAACCTATGCTTGGTCTAGTTTGATCTTTCTTCCCTCTACCACTGGTCCAATACTTACCAAACCTTTCAACTGGTTTTTCCTATCACGTTGGGGTCAATATAGACACCTGCAGATATCCTTGTATACACAGCCCAAATTATTGATGCGCGGTGTTTCTGGTGGATTGATTTCAAGACTTTGA 2964 0.3839 MTYITSFSSRIVTFLLLTTLTSDGLTLLSLLTHWTSVPTLIRSSWKASDSNPCSWFGIQCDHAQNVISINLTGLGISGQIGHEIGNLYHLQTLVLLGNSFSGTIPSSLGNCSKLEHLELSSNHLRGEIPISIWRIPSLVNILVHNNNLSGELPFEMTKLKYLKNISLFDNQFSGVIPQSLGINSSIVKLDCTNNKFSGNIPPNLCFGKNLSELNMGSNQLQGVVPSDIGKCETLRRLFVGDNNFTGSLPKFESNLNLKYIDISKNNMGGSIPSSLGNCTNLTYINLSWNKFAGLVPSELGNLVNLVILDLSHNNLQGSLPLELSNCTKMDRFDVGFNFLNGSLPSSLRSWTNITTLVLSENHFTGGIPAFLAALGNLRELQLGGNLFGGTIPSWIGTLDNLFYGLNLSANGLIGDIPFEIRKLELLQSLDISLNNLTGSIHALGGLVSLTEINISYNFFTGSVPETIILQKLLNSSPSSFIGNPLLCVIFGCIHTNSYSKEQPVYEGSHKVSKVRIIVLMELGPSIFISAILVIIIRIYCIRKESRRASDLQLMFFNVRGEESFEFTNDSDYELKISTEKEMSSLQEQVLEATENLKDDYIIGRGAHGIVYKAIIGRQVCAVKKLEFGRNKQKRLLITRNEIKVLRIIKHPNLIKYVDYWIGKDYGLVLYEFMENGSLYEILHEKKPAPLTWNVRCKTAVGIAQGLAYLHYDCIPPIVHRDIKPKNILLDNNMEAVIADFGTALCKKLFEDSNSHSETRKMLSSHVVGTPGYIAPENAYDIVPGRKSDVYSYGVVLLELITRKKLLVPSINDEANEIHIVTWARSVMMETGMIENIVDPYLASAFPNSIALTMQVTAVLSLALQCTEKDPQKRPTMKGVIDFYNKNLFNLRCDEVQYGADGLVIKLMGNGKIRYEIVVGIANLVVPKITYAWSSLIFLPSTTGPILTKPFNWFFLSRWGQYRHLQISLYTQPKLLMRGVSGGLISRL* 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0005 987 ProSitePatterns Protein kinases ATP-binding region signature. 602 624 IPR017441 GO:0005524
Tpr4g0005 987 Pfam Leucine rich repeat N-terminal domain 22 61 IPR013210 -
Tpr4g0005 987 ProSiteProfiles Leucine-rich repeat profile. 304 327 IPR001611 GO:0005515
Tpr4g0005 987 SMART serkin_6 596 883 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g0005 987 ProSiteProfiles Protein kinase domain profile. 596 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g0005 987 Coils Coil 575 595 - -
Tpr4g0005 987 Gene3D Ribonuclease Inhibitor 23 180 IPR032675 -
Tpr4g0005 987 ProSitePatterns Serine/Threonine protein kinases active-site signature. 717 729 IPR008271 GO:0004672|GO:0006468
Tpr4g0005 987 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 112 893 - -
Tpr4g0005 987 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 11 123 - -
Tpr4g0005 987 Gene3D Transferase(Phosphotransferase) domain 1 673 893 - -
Tpr4g0005 987 Gene3D Phosphorylase Kinase; domain 1 575 672 - -
Tpr4g0005 987 SUPERFAMILY Protein kinase-like (PK-like) 584 881 IPR011009 -
Tpr4g0005 987 Gene3D Ribonuclease Inhibitor 185 492 IPR032675 -
Tpr4g0005 987 Pfam Leucine rich repeat 256 315 IPR001611 GO:0005515
Tpr4g0005 987 SUPERFAMILY RNI-like 176 468 - -
Tpr4g0005 987 PANTHER OS08G0446200 PROTEIN 11 123 - -
Tpr4g0005 987 PANTHER OS08G0446200 PROTEIN 112 893 - -
Tpr4g0005 987 Pfam Protein kinase domain 599 879 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g0005 987 SUPERFAMILY L domain-like 23 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0005 Tpr-Chr4 53357 60079 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0005 64 880 Receptor kinase-like Gene Family AT1G73080 46.089 0.0 669
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tpr4g0005 Pkinase 2.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0005 - - mtr:MTR_5g087370 1235.71