Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4985 ATGTATGGGAGAAAAGCTTGCCAACTTGTGAAAGAATTTGCAAGTGGAGAAAAGGGCCAGCTCACACCATTTAATAATGACTTGTTTGATCAAGTAGTTGCAGAATGCAGCCAACACAACGGTGAGCTCCAGTCCATGATAAGGAAGATGCAGGAAGAAGGCTTGGATGTCCAAACTGCTAGAAATGCTGACCACTACGGAGCCCTCATCCACCTATTTTCTATAGTCCGAAATAAACATTGTCTAACAGCCTATGTGTATAACCGAGCAGAAACTATACGGAACTTGTTATGGAAAATAGGGCCCGTGATCCCTAAAGAAATTGAAGAGAAGCTTGATCATTGGGAGGAAGAGTATTTCAAGAAGCATTCTTCAGCATTAAAATCTTATATGTCAAAAGTGCTGGTTGATCTGACTGTGGATATGGTACCACCAAAAGATCCATACATCCAAGTAAGGGTCCTTGAAGACATAATAGAAGGCATAGTACTTAGTGATGATAAGAATCCCAATTTTGCCCGGCATTCAATGCATTTTCTGAAACGAACTGATGCTGAGAAATATATCTCGCGGGGCTTAATGGAGGAGCTCACTGGTTGA 600 0.415 MYGRKACQLVKEFASGEKGQLTPFNNDLFDQVVAECSQHNGELQSMIRKMQEEGLDVQTARNADHYGALIHLFSIVRNKHCLTAYVYNRAETIRNLLWKIGPVIPKEIEEKLDHWEEEYFKKHSSALKSYMSKVLVDLTVDMVPPKDPYIQVRVLEDIIEGIVLSDDKNPNFARHSMHFLKRTDAEKYISRGLMEELTG* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4985 199 Gene3D - 1 134 - -
Tpr3g4985 199 Pfam GINS complex protein 45 116 IPR021151 -
Tpr3g4985 199 PANTHER PARTNER OF SLD5 1 195 IPR005339 GO:0000811|GO:0006260
Tpr3g4985 199 CDD GINS_A_psf1 3 134 IPR005339 GO:0000811|GO:0006260
Tpr3g4985 199 SUPERFAMILY GINS helical bundle-like 1 146 IPR036224 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4985 Tpr-Chr3 54269784 54275047 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4985 1 199 Core DNA Replication Machinery Family AT1G80190 68.317 3.79e-101 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4985 K10732 - qsu:112021696 329.331